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RES-32XR3/FIO Installation Manual

1. I Ao BO oA Ao OB OA B VW 1 735 Bezel Cover Legend t 6 490 ma 2 815 Screw Hole Size 48 32 A holes Steel Slides 18 12 380 gt B holes Aluminum Slides 22 lt a 15 250 gt Figure B 1 Screw Locations for Rack Mount Slides B 1 Themis Computer RES 32XR3 FIO Installation Manual Dimensions of the screw hole patterns on the sides of the RES 32XR3 FIO chassis for installing rack mount slides are shown in Figure B 1 Holes for steel slides are marked A and holes for aluminum Jonathan slides are marked B Caution Any screws used to mount a slide to a RES 32 chassis must not exceed a length of 3 8 to prevent excessive penetration of the chassis The rack mount slide installation kit includes the following items a Two inside slide sections b Two outside slide sections c Two front short slide brackets d Two rear long slide brackets e Assorted screws washers and nuts Follow these steps to install a steel rack mount slide to the RES 32XR3 FIO chassis 1 Attach the inside slide section see Figure B 2 on page B 3 to both sides of the RES 32XR3 FIO chassis using four 8 32 screws per side 2 Measure the depth of the 19 equipment rack into which the RES 32XR3 FIO system will be installed this can vary from 24 to 30 3 Using the depth of the equipment rack adjust and attach the front and rea
2. 2 13 Figure 2 12 Right Rack Mount Bracket 2 14 Figure 2 13 AC Power Socket and LED on the RES 2Z2NRIMEIO 2 15 Figure 2 14 System Power Button and LED on the RES 32XR3 FIO Front 2 16 Fis re 31 Matn BIOS Setup Screen aatal he ee asa eg 3 3 Fig re 3 2 E EE 3 5 LTC e 3 30 Figure3 4 kee 3 32 Figure 3 50 SMD UDS A AA E OS a n 3 34 Figure 3 6 AMI FLSH HyperTerminal 000 ec eececeeneeeseeeeceeeeeceeeeecseeeeneeeenaeeees 3 38 Figure 3 7 ROM File Extraction y5 2i ssccsscsavesaccissnendiaspcecdsaiguiadenvvaseaacsedesaceassasedeateceasseluana 3 39 Themis Computer XV RES 32XR3 FIO Installation Manual Figure 3 8 Flashi RECOV CLG ama aaa ka ca 3 39 Figure A 1 USB Connector PimOut c ciiscctes atv vavitidutss iter sre t kk t emad keda k ec A 2 Figure A 2 COM 1 Serial Connector Pmnout ccccccccsscceceeseneeeeesesececessseeeeeeeenaeeeenes A 2 Figure A 3 RES 32XR3 FIO VGA Connector Pmout A 3 Figure A 4 Ethernet Connector Type RIJ45 cece ccccceseceeeceeeeeeseeceaeceeeseeeenseecsaeeneenenes A 4 Figure B 1 Screw Locations for Rack Mount Slide B 1 Figure B 2 RES 32XR3 FIO Rack Mount Slide Installation 0 cece eeceeeteeeeeeeeeeeenees B 3 Figure C 1 Power On after Linux DVD is Inserted into Drive mmmtmese C 2 Kisure e EE C 2 Fig re C 3 Welcome Screen EE C 3 Figure C 4 Language Selecta EE C 3 Figure C 5 Selecting Layout EE CA Figure C 6 Enter Installation Number C 4 Figure C 7
3. Preface This document entitled RES 32XR3 FIO Installation Manual provides instructions on how to install configure power up boot and perform diagnostics on the Themis Rugged Enterprise Server RES 32XR3 FIO see photo based on two 64 bit Intel 5520 Series Xeon Ouad Dual Core CPUs with up to 6 4 GT s each RES 32XR3 FIO supports the SuperMicro X8DAH F motherboard in a 16 chas EE WU e M E III ill 11 III m PP Figure 1 Rugged Enterprise Server Model RES 32XR3 FIO sis A matrix describing 16 chassis configurations is given in Table 3 page xxii for a matrix describing 17 chassis configurations see Table 2 page xxi a matrix describing 20 chassis configurations is in Table 1 page xx Themis Computer RES 32XR3 FIO Installation Manual XX Table 1 RES x2XR3 Manual Matrix AC and DC Power Supplies RES 32XR3 RES 22XR3 RES 12XR3 Manual Motherboard Manual Manual Manual Part Number Part Number Part Number Configuration 1 Said 116790 024 1176789 024 9 X8DTH 6F X8DTi Configuration 2 X8DTi F 117022 024 117017 024 X8DTi LN4F X8DT3 Configuration 3 X8DT3 F 117023 024 117018 024 X8DT3 LN4F Configuration 4 X8DTN 117024 024 117019 024 Configuration 5 AODA 117025 024 117020 024 9 X8DA3 Configuration 6 X8DAH F 117026 024 117021 024 Configuration 7 X8DTU F 117280 024 116970 024 Naming Key X8Dvwxyz e System RES x2XR3 where x
4. to the operator To reduce the risk follow the instructions accompanying this sym Warning A warning describes a procedure or action that may cause injury or death bol Sidebar A sidebar adds detail to the section within which it is placed but is not absolutely vital to the description or procedure of the section xxiv Themis Computer General Section Chapter Overview and Specifications 1 1 Overview The RES 32XR3 FIO see Figure 1 1 below is a rack mounted system designed for above average shock and vibration environments The RES 32XR3 FIO supports single or dual Intel 1366 pin LGA Xeon 64 bit processors each up to 2 33 GHz with a 1333 MHz system bus and has many computer and graphics intensive and diverse I O capabilities ideal for a variety of military aerospace and commercial telecommunications applications Motherboard options supported by RES 32XR3 FIO are listed in Table 1 1 on page 1 2 tan MITT a Me D gt MAX M WAT Figure 1 1 RES 32XR3 FIO 1 1 Themis Computer RES 32XR3 FIO Installation Manual A block diagram is given in Figure 1 2 page 1 2 Table 1 1 RES 32XR3 FIO Motherboard Options PCl e Slots Mother Memory A A board IPMI SATA SAS Slots Graphics Audio PCl e PCl e x16 x8 X8DAH F Yes Yes 18 Yes Yes 3 4 a SuperMicro Computer Inc The RES 32XR3 FIO is designed
5. BIOS Setup Utility Advanced Setup Configurations BMC Watch Dog TimeOut Min Sec This option appears if BMC Watch Dog Timer Action above is enabled This is a timed delay in minutes or seconds before a system power down or reset after an operating system failure is detected The options are 5 Min 1 Min 30 Sec and 10 Sec 3 3 18 Event Log Configuration 3 3 18 1 View Event Log Use this option to view the System Event Log 3 3 18 2 Mark all events as read This option marks all events as read The options are OK and Cancel 3 3 18 3 Clear event log This option clears the Event Log memory of all messages The options are OK and Cancel 3 3 18 4 PCI Error Log Use this option to enable PCI error PERR logging The options are Yes and No 3 29 Themis Computer RES 32XR3 FIO Installation Manual 3 4 Security Settings The AMI BIOS provides a Supervisor and a User password If you use both pass words the Supervisor password must be set first Change Supervisor Password Figure 3 3 Security Settings 3 4 1 Supervisor Password This item indicates if a Supervisor password has been entered for the system Not Installed means a Supervisor password has not been used 3 4 2 User Password This item indicates if a user password has been entered for the system Not Installed means that a user password has not been used 3 4 3 Change Supervisor Password Select this feat
6. 3 2 or 1 v A Sound chip no graphics chip T Graphics chip no sound chip Configuration 6 motherboard X8DAH F supports both audio and video however the naming key does not contain a T in the title w H Two Tylersburg Northbridge chips blank One Tylersburg Northbridge chip U Motherboard with cutout x i SATA only 8 SAS1 0 6 SAS2 0 y LN4 Extra gigabit Ethernet controller for two extra ports z F IPMI blank No IPMI Themis Computer Preface Table 2 RES x2XR3S RES x1XR3 17 Chassis Manual Matrix AC and DC Power Supplies Mother CPU RES RES RES RES RES RES board Soc 32XR3S 22XR3S 12XR3S 31XR3 21XR3 11XR3 kets Manual P N Manual P N Manual P N Manual P N Manual P N Manual P N X8DTL 6F 2 117408 024 117412 024 117416 024 X8DTL 6 X8DTL 3F 2 117409 024 117413 024 117417 024 X8DTL 3 aie 2 117410 024 117414 024 117418 024 X8DTL i anes 2 117411 024 117415 024 117419 024 X8DAL i X8SAX 1 117420 024 117421 024 X8ST3 F 1 117385 024 117422 024 X8STE 29 j X8STi X8STi F 1 117423 024 X8STi LN4 Se X8STi 3F Naming Key X8uvwxyz e System RES x2XR3S and RES x1XR3 where x 3 2 ot 1 u D Double CPU sockets S Single CPU socket v A Sound chip no graphics chip T Graphics chip no sound chip w Notapplicable x SATA only 8 SAS1 0 6 SAS 2 0 y LN4 Extra gigabit Ethernet
7. Bod Ra e 2 14 SEL M nting Brackets engt enedu gded ee nan an e ENEE 2 14 2 2 2 Rack Mount Slides Optional 2 cicsscasessccdsjeecyesntse ohne nakatada k ni 2 15 2 3 GEREEST 2 15 2 3 1 Plugging in the AC Power Cords 125 444 n va540vahv pa date praed ahga dekaad kogaa teena 2 15 LHA ATER SEALE EE 2 16 2221 OHH OU AMON E sl aias 2 16 2 3 2 2 Turning The System On rssisvikavaava tainas valatakse vea e kaeve 2 16 23 23 Linux Installation eecggeee ceassevasasvatsaseovaceasesceusa spavaavebvuseecasses 2 16 233 SUTIN the Sy SEI Offarase naa A KE 2 17 3o BIOS Selup Utility EE 3 1 SS WW et ee 3 1 3 1 1 Starting BIOS Setup Utility kaisa amaan 3 1 3 1 2 How To Change the Configuration Data mtteemteenneeenneee 3 2 313 Starine the Setup Utility E 3 2 3 2 Mam SOU ee eer elei Eegen 3 3 3 2 1 System Time System Date iita aona tege kandmata 3 3 3 2 2 Supermicro XS DAM Ate be ees 3 4 3 2 3 MPIC OSS OF EE 3 4 viii Themis Computer Table of Contents BDA o System Memory eet eegen tie Sege te aitan okas kimajaid ters 3 4 3 3 Advanced Setup Configurations usa aal 3 5 3 3 1 BOOL Peavures ee EEN Eder ed 3 5 3 3 121 VOHIEK BOOL Ee EE 3 5 331425 e Ee EE 3 5 3 3 1 3 AddOn ROM Display Mode ask 3 6 33 14 Boot p NUMLOGK mirutusesitnaadalivitkadi eirese tsita i ens 3 6 El E MOUSE Support eer 3 6 Jeko Walt Ot El METOT parata 3 6 3 3 1 7 Hit Del Message Display 2 scsecsdcsecesinsccecsvessscatssnt
8. Advanced Chipset Control The items included in the Advanced Settings submenu are listed below QPI 8 IMC Configuration QPI Links Speed This feature selects QPI s data transfer speed The options are Slow mode and Full Speed OPI Frequency This selects the desired QPI frequency The options are Auto 4 800 GT 5 866GT 6 400 GT QPI LOs and L1 This enables the QPI power state to low power LOs and L1 are automatically selected by the motherboard The options are Disabled and Enabled Memory Frequency This feature forces a DDR3 frequency slower than what the system has detected The available options are Auto Force DDR 800 Force DDR 1066 and Force DDR 1333 Memory Mode The options are Independent Channel Mirror and Lockstep and Sparing e Independent All DIMMs are available to the operating system e Channel Mirror The motherboard maintains two identical copies of all data in memory for redundancy e Lockstep The motherboard uses two areas of memory to run the same set of Themis Computer BIOS Setup Utility 3 3 4 6 3 3 4 7 3 3 4 8 Advanced Setup Configurations operations in parallel e Sparing A preset threshold of correctable errors is used to trigger fail over The spare memory is put online and used as active memory in place of the failed memory Demand Scrubbing A memory error correction scheme where the Processor writes corrected data back into the memory block from where it
9. If this item is set to Disabled the ROM BIOS of the host adaptors Themis Computer BIOS Setup Utility 3 3 2 3 3 2 1 3 3 2 2 3 3 2 3 3 3 2 4 3 3 2 5 Advanced Setup Configurations will not capture Interrupt 19 and the drives attached to these adaptors will not func tion as bootable devices The options are Enabled and Disabled Processor and Clock Options This submenu allows the user to configure the Processor and Clock settings CPU Ratio If set to Manual this option allows the user to set the ratio between the CPU Core Clock and the FSB Frequency The options are Auto and Manual Note If an invalid ratio is entered the AMI BIOS will restore the setting to the previous state Ratio CMOS Setting Available when the item CPU Ratio is set to Manual If CPU Ratio is set to Manual above this option allows the user to set the ratio between the CPU Core Clock and the FSB Frequency The default setting depends on the type of CPU installed on the motherboard The default setting for the CPU installed in your motherboard is 21 Press or on your keyboard to change this value Clock Spread Spectrum Select Enable to use the feature of Clock Spectrum which will allow the BIOS to monitor and attempt to reduce the level of Electromagnetic Interference caused by the components whenever needed The options are Disabled and Enabled Hardware Prefetcher Available when supported by the CPU
10. RES 32XR3 FIO Installation Manual Ek QPI PreGuen y Zensen ee ee Een 3 10 DiS QPI EOS AHAA EE 3 10 3 3 4 4 Memory ee TEE 3 10 3 3 4 5 Memory Mod iesen gedd ad ined a s 3 10 3 3 4 6 Demand Scrubbing ssessssssssessesssessssesssseesseesserssersseeesseersseesseesse 3 11 SO Patrol SCTUD OME EE 3 11 3 3 4 8 Throttling Closed Loop Throttling Open Loop ss ssss0 3 11 3 23 49 HDA Controller eege e e e ii Ke 3 12 JZ 24 Mel E EE 3 12 3 24 111 Le 3 12 3 3412 NUMA Support eer Ee Ee EENS 3 13 3 3413 Intel VOAT ssineatmiaktitkikatiusvalkiapaata eege ged 3 13 3 3 4 14 Active State Power Management eeceeeeeceeeseeceeececseeeeesees 3 13 3 3 4 15 Route Port 80h Cy CIES EE 3 13 DIAG USB FRERES 3 13 2 24 12 ER EE ee 3 13 tbe Legacy USB Support samusesse al Aile ees 3 13 3 3 5 IDE Ploppy Configuration sisccccsisielesscavseecavzacascedsieystes kihk akudeksna avada teke 3 13 Sech BIODDY Arakas 3 14 3 3 5 2 SATA 1 Configuration kuma 3 14 3 3 5 3 IDE Detect Timeout sec a e A NRR 3 14 3 3 5 4 Primary IDE Master Slave Secondary IDE Master Slave Third IDE Master and Fourth IDE Master mmeeee 3 14 3 3 6 PEPE Co fi urati n MKS SA a AS 3 17 3D6N SISE NV RAM asutas aaasta 3 17 3 3 6 2 gt Pluie amp Play NEE 3 17 E PCL Iateney kt EE 3 17 3 3 64 PCI IDE BusMaster tegen eege dee EES 3 17 3 3 6 5 PCI E THO Performance ss scicsisanssasaieseatersvavacceshsaveatasevaccasaocavates 3 17 3 3 6 6 PCI
11. This is the air flow speed to the DIMM modules Each step is one mm sec The default is 1500 Press or on your keyboard to change this value Altitude This feature defines how many meters above or below sea level the system is located Options are Sea Level or Below 1 300 301 600 601 900 901 1200 1201 1500 1501 1800 1801 2100 2101 2400 2401 2700 and 2701 3000 DIMM Pitch This is the physical space between each DIMM module Each step is in 1 1000 of an inch The default is 400 Press or on your keyboard to change this value HDA Controller Select Enabled to activate the onboard High Definition Audio controller The options are Enabled and Disabled 3 3 4 10 Intel VT d 3 3 4 11 Select Enabled to enable Intel s Virtualization Technology support for Direct I O VT d by reporting the I O device assignments to VMM through the DMAR ACPI Tables This feature offers fully protected I O resource sharing across the Intel plat forms providing the user with greater reliability security and availability in net working and data sharing The settings are Enabled and Disabled SR IOV Support Single Root I O Virtualization is an industry standard mechanism that allow devices to advertise their capability to be simultaneously shared among several virtual machines SR IOV is capable of partitioning a PCI function into several virtual interfaces for sharing the resources of a PCI Express PCI E device u
12. 32XR3 FIO Installation Manual 3 3 6 6 3 3 6 7 3 3 6 8 3 3 6 9 3 3 7 3 3 7 1 PCI E Slot 1 x8 PCI E Slot 2 x16 PCI E Slot 3 x8 PCI E Slot 4 x8 in x16 slot PCI E Slot 5 PCI E x4 in x8 slot PCI E Slot 6 x16 PCI E Slot 7 x8 This feature allows you to Enable or Disable any of the PCI slots The options are Enable and Disable Onboard LAN Option ROM Select Select the onboard LAN option ROM type The options are iSCSI and PXE Load Onboard LAN1 Option ROM Load Onboard LAN2 Option ROM Select Enabled to enable the onboard LAN1 or LAN2 Option ROM This is to boot computer using a network interface The options are Enabled and Disabled Boot Graphics Adapter Priority This feature allows the user to select the priority graphics adapter for system boot The options are Auto and Onboard VGA Super IO Device Configuration Serial Porti Address Serial Port2 Address This option specifies the base I O port address and the Interrupt Request address of Serial Port 1 and Serial Port 2 Select Disabled to prevent the serial port from access ing any system resources When this option is set to Disabled the serial port physi cally becomes unavailable Select 3F8 IRQ4 to allow the serial port to use 3F8 as its VO port address and IRQ 4 for the interrupt address The options for Serial Port 1 are Disabled 3F8 IRQ4 3E8 IRQ4 2E8 IRQ3 The options for Serial Port 2 are Dis abled 2F8 IRQ3 3E8 IRQ4 and 2E8 IRQ3 Serial P
13. 6 3 3 3 6 4 3 3 6 5 Advanced Setup Configurations S M A R T For Storage drives Self Monitoring Analysis and Reporting Technology SMART can help predict impending drive failures Select Auto to allow the AMI BIOS to automatically detect storage drive support Select Disabled to prevent the AMI BIOS from using the S M A R T Select Enabled to allow the AMI BIOS to use the S M A R T to sup port storage drives The options are Disabled Enabled and Auto 32 Bit Data Transfer Select Enable to enable the function of 32 bit IDE data transfer The options are Enabled and Disabled PCI PnP Configuration Clear NVRAM This feature clears the NVRAM during system boot The options are No and Yes Plug amp Play OS Selecting Yes allows the OS to configure Plug amp Play devices This is not required for system boot if your system has an OS that supports Plug amp Play Select No to allow the AMI BIOS to configure all devices in the system PCI Latency Timer This feature sets the latency Timer of each PCI device installed on a PCI bus Select 64 to set the PCI latency to 64 PCI clock cycles The options are 32 64 96 128 160 192 224 and 248 PCI IDE BusMaster When enabled the BIOS uses PCI bus mastering for reading writing to IDE drives The options are Disabled and Enabled PCI E I O Performance This feature sets the PCI E maximum payload size The options are 128B and 256B 3 17 Themis Computer RES
14. AAA ISL POS o EE a Bede oda a E E TE laad A 2 xii Themis Computer Table of Contents EE 100 EE A RE TA A 2 Pc RE El GE A 3 A3 Gigabit Ethemet AN Ports aaa valamata aaa ar kids A 4 Ap IPMI Dedicated LAN Potties sictstiiiat enee Age EE Ee ad A 4 Appendix B Rack Mount Slide Installation 0 0 0 ccc ccccccccssceesseceesseeeeseeeesseeeeaees B 1 Appendix C Red Hat Enterprise Linux 5 Installation C 1 CL Botanesche eeh C 1 C2 MAIST MANDA runs Sean teres dean ea a Ee C 2 CZ SSR EE E C 2 De Eeer C 2 C23 SIED EE C 3 246 Jep deene lee la aaa kski Ee C 3 824 188 EE C 4 C26 E C 4 EDF EDL TEE C 5 EE C 6 CAI EE ee C 7 02 10 Sie E E C 8 EZ TDI EE ENEE ER C 9 EE Eeer eege C 10 C 213 Step Leier Wee sent hea gene Eed ai iela C 11 E lf EE C 12 C215 Step IS ena SA ENE a n ext a eee aea aE eS C 13 Eeer eg C 14 C217 Step IP suudles ua kl C 15 EE C 16 EE Seeerei C 16 C220 SCP RE C 17 DDN EE C 18 DEE C 18 Appendix D Optional Remote On Off Switch mmmeeeeneeeeeneeennneeeenneeeennee D 1 D 1 Remote On Off Configuration ege OR D 1 xiii Themis Computer RES 32XR3 FIO Installation Manual D 2 Remote Only CONTI SATA OH EE D 2 D 3 Ordering the Remote On Off Switch sealtkaudu eseme dla aste annan kaak D 2 Appendix E Re Packing Instructions 0 0 0 0cccccccccccesscecssececssececsseeecsseeecseeeesseeeesaees E 1 Bet Re Packaging for Shipment E EE E 1 E 2 Packing Components enrere e
15. Console Redirection active all the time after POST Note This setting may not be supported by some operating systems Select Boot Loader to keep Console Redirection active during POST and Boot Loader The options are Disabled Boot Loader and Always Terminal Type This feature allows the user to select the target terminal type for Console Redirec tion The options are ANSI VT100 and VT UTF8 VT UTF8 Combo Key Support A terminal keyboard definition that provides a way to send commands from a remote console Available options are Enabled and Disabled Sredir Memory Display Delay This feature defines the length of time in seconds to display memory information The options are No Delay Delay 1 Sec Delay 2 Sec and Delay 4 Sec Hardware Health Monitor This feature allows the user to monitor system health and review the status of each item as displayed CPU Overheat Alarm This option allows the user to select the CPU Overheat Alarm setting which deter mines when the CPU OH alarm will be activated to provide warning of possible Themis Computer BIOS Setup Utility Advanced Setup Configurations CPU overheat bi Caution 1 Any temperature that exceeds the CPU threshold temperature pre defined by the CPU manufacturer may result in CPU overheat or system instability When the CPU temperature reaches this predefined threshold the CPU and system cooling fans will run at full speed 2 To avoid possible sys
16. Notes Figure C 19 Installation Begins Step 19 Installation Starts see Figure C 19 on page C 16 Themis Computer C Red Hat Enterprise Linux 5 Installation Installation C 2 20 Step 20 RED HAT ENTERPRISE LINUX 5 Congratulations the installation is complete Remove any media used during the Installation process and press the Reboot button to reboot your system ess _ Betease Notes AJ Reboot Figure C 20 Installation is Complete Step 20 Congratulations Your Red Hat Enterprise Linux installation is now com plete The installation program prompts you to prepare your system for reboot Remember to remove any installation media if it is not ejected automatically upon reboot see Figure C 20 on page C 17 After your computer s normal power up sequence has completed the graphical boot loader prompt appears at which you can do any of the following things e Press Enter causes the default boot entry to be booted e Select a boot label followed by Enter causes the boot loader to boot the operat ing system corresponding to the boot label Do nothing after the boot loader s time out period by default five seconds the boot loader automatically boots the default boot entry Do whatever is appropriate to boot Red Hat Enterprise Linux One or more screens of messages should scroll by C 17 Themis Computer RES 32XR3 FIO Installation Manual C 2 21 Step 21 RED HAT ENTERPRIS
17. Serial Flash support embedded in the BIOS image file e The Host system should also have a serial port and a terminal program that supports XModem Transfer protocol Hyper Terminal for the Windows oper ating systems and minicom for Linux FreeSBD etc e A Null modem serial cable How to use Serial Flash for Boot Sector Recovery 1 Connect a Null modem serial cable between the target system and the host system that runs the terminal program 2 Make sure that the new BIOS Image file is accessible for the host system 3 Start the terminal program on the host system and create a new connection Use the following communication parameters for the new connection e Bits per second 115200 bits sec e Data Bits 8 e Parity None e Stop Bit 1 e Flow Control None 4 Power on your system and click the lt Connect gt button in the Hyper Terminal The terminal screen will display the following messages Press lt SpaceBar gt to update BIOs Confirm update BIOS y n aw Begin remote BIOS flash y n y starting remote flash Upload new BIOS file using Xmodem protocol 5 Follow the instructions given on the screen to update the BIOS These instruc tions are also shown below a At the prompt press the lt SpaceBar gt to update the BIOS b When asked to confirm BIOS updating press lt y gt to confirm BIOS up dates 3 37 Themis Computer RES 32XR3 FIO Installation Manual c Press lt y gt again
18. Table 2 RES x2XR3S RES x1 XR3 17 Chassis Manual Matrix AC and DC Power Supplies E xxi Table 3 RES x2XR3 FIO 16 Chassis Manual Matrix AC and DC Power Supplies xxii Table 1 1 RES 32XR3 FIO Motherboard Options escceeseeceeeeeceeeeeceeeeeceeeeeeeneeeees 1 2 Table 1 2 RES 32XR3 FIO Major Features j cssccsdiscdesasiscansves soscdesceseeatacosbacch sansceanteoate 1 2 Table 1 3 Specifications of the RES 32XR3 PIO ised ected eclie Ghd geaae 1 5 Table 1 4 System LEDS ee a eke pt de ese E AE 1 8 Table 1 5 TO COMME ChOIS ee RTE ST M 1 9 Table 1 6 RES 32XR3 FIO General Specifications eeormeeeenneeoonneeeenneee 1 15 Table 1 7 RES 32XR3 FIO Electrical Specifceatons 1 16 Table 1 8 Approximate Weights of the RES Bertes AA 1 19 Table 2 1 RES 32XR3 FIO Memory Capacity zent ieege AugEAdEger EREN gedeelt ge 2 3 Table 2 2 RES 32XR3 FIO Optimal Memory Population Two CPUs Installed 2 3 Table A 1 PS 2 Keyboard Mouse Pinout and Signal Descriptions A 1 Table A 2 USB Connector Pinout Signal Descriptions wrenneoentee A 2 Table A 3 COM 1 Serial Connector Pinout Signal Descriptions eree A 2 Table A 4 RES 32XR3 FIO VGA Connector Pin Signals 0 0 0 ceeeeceeeeeceteceeeteeeeeeeees A 3 Table A 5 RJ45 Ethernet Pinout Signals ee EE A 4 Themis Computer xvii RES 32XR3 FIO Installation Manual xviii Themis Computer
19. The wide range of functions integrated onto the Super I O greatly reduces the number of components required for interfacing with floppy disk drives The Super I O supports 360 K 720 K 1 2 M 1 44 M or 2 88 M disk drives and data transfer rates of 250 Kb s 500 Kb s or 1 Mb s It also provides two high speed 16550 compatible serial communication ports UARTs Each UART includes a 16 byte send receive FIFO a programmable baud rate generator complete modem control capability and a processor interrupt system Both UARTs provide legacy speed with baud rate of up to 115 2 Kbps as well as an advanced speed with baud rates of 250 K 500 K or 1 Mb s which sup port higher speed modems The Super I O provides functions that comply with ACPI Advanced Configuration and Power Interface which includes support of legacy and ACPI power manage ment through an SMI or SCI function pin It also features auto power management to reduce power consumption Specifications 1 9 1 14 Overview of the Winbond WPCM450 Con troller The Winbond WPCM450 Controller is a Baseboard Management Controller BMC that supports the 2D VGA compatible Graphics Core with the PCI interface Virtual Media and Keyboard Video Mouse Redirection KVMR modules With blade ori ented Super I O capability built in the WPCM450 Controller is ideal for legacy reduced server platforms The WPCM450 interfaces with the host system via a PCI interface to communicate with the Grap
20. Themis Computer BIOS Setup Utility 3 3 12 3 3 12 1 Advanced Setup Configurations security The options are No and Yes If this feature is set to Yes the following items will display Indicate Physical Enables indication of physic al presence to TPM device each time the system starts The options are Yes and No TPM Deactivated Use this feature to Set or Clear the TPM device The options are Set Clear and Don t Change TPM Owner Use this feature to Install or Clear the TPM ownership The options are Don t Change Enable Install Disable Install and Clear Execute TPM Command Select Enabled to allow the user to change executable TPM commands and TPM set tings Select Don t Change to keep the current TPM settings The options are Don t Change Enabled and Disabled TPM Enable Disable Status This item displays the status of TPM Enabled Disabled state e TPM Owner Status This item displays the status of TPM Ownership IPMI Configuration Intelligent Platform Management Interface IPMI is a set of common interfaces that IT administrators can use to monitor system health and to manage the system as a whole For more information on the IPMI specifications please visit Intel s website at www intel com IPMI Firmware Revision This item displays the current IPMI firmware revision 3 25 Themis Computer RES 32XR3 FIO Installation Manual 3 3 12 2 Status of BMC 3 3 13 Baseboard Management Control
21. a monitor device Ethernet LAN Ports e Standard RJ45 connectors to attach one or two gigabit Ethernet LAN line s LAN 1 and LAN 2 IPMI Dedicated LAN Port e Standard RJ45 connector to attach a dedicated IPMI LAN line 1 9 Themis Computer RES 32XR3 FIO Installation Manual 1 3 1 10 1 3 1 Chipset Overview Built upon the functionality and capability of the Intel 5500 5600 series processor platform the RES 32XR3 FIO motherboard provides the performance and feature sets required for dual processor IOH based high end systems optimized for High Performance Computing HPC Cluster platforms The 5520 chipset consists of the IOH 36D I O Hub and the ICHIOR South Bridge With the Intel QuickPath Interconnect QPI controller built in the 5520 platform offers the next generation point to point system interconnect interface that replaces the current Front Side Bus Technology substantially enhancing system performance and scalability The IOH 36D connects to each processor through an independent QPI link Each link consists of 20 pairs of unidirectional differential lanes for transmission and receiving in addition to a differential forwarded clock A full width QPI link pair provides 84 signals The 5520 chipset supports up to 36 PCI Express Gen2 lanes peer to peer read and write transactions The ICHIOR provides up to seven PCI Express ports six SATA ports and 10 USB connections In addition th
22. be ge eh CD DVD 3 PCI Express 2 0 x8 S Combo Drive 4 PCI E 2 0 x8 in x16 sloi g 3 a Housing 5 PCI E x4 in an x8 slot ZA 6 PCI Express 2 0 x16 il 7 PCI Express 2 0 x8 Verne TTT Pa fk Duren ee bee bemenbadeny een eet etee rn A an Lithium Battery A RIEL under cabling 0 ore 0 6 120 mm Fan 1 of 3 Figure 1 4 Major Components of RES 32XR3 FIO Open Top View Themis Computer Overview and Specifications System LEDs and I O Connectors d LEDs A OT ENETI ENET2 4 ant Storage Power Power NIC1 NIC2 Overheat Power Drives Fail Fail Fan Fail B PS1 PS2 IPMI Dedicated LAN COM 1 Port PS2 S Knockout slot LAN2 LAN1 Back surround CEN LFE Line in Front Microphone in Side surround PS2 Keyboard VGA SS top USB1 btm gie 2 5 Figure 1 5 RES 32XR3 FIO System LEDs and I O Connectors1 5 1 7 Themis Computer RES 32XR3 FIO Installation Manual 1 8 Table 1 4 System LEDs LED Description Power e Indicates that the system is turned on Storage Drive SD e Indicates SATA storage drive activity ENET1 E NIC1 Gb Ethernet e Indicates network activity on LAN 1 ENET2 lt gt NIC2 Gb Ethernet e Indicates network activity on LAN 2 Power Fail Lower Power Supply Power Fail Upper Power Supply e Warns that there is a failu
23. during an attack The default is Enabled Refer to Intel and Microsoft Web Sites for more information Simultaneous Multi Threading Available when supported by the CPU Set to Enabled to use the Simultaneous Multi Threading Technology which will result in increased CPU performance The options are Disabled and Enabled Active Processor Cores Set to Enabled to use a processor s Second Core and beyond Please refer to Intel s web site for more information The options are All 1 and 2 3 3 2 10 Intel EIST Technology EIST Enhanced Intel SpeedStep Technology allows the system to automatically adjust processor voltage and core frequency in an effort to reduce power consump tion and heat dissipation Please refer to Intel s web site for detailed information The options are Disabled and Enabled Themis Computer BIOS Setup Utility Advanced Setup Configurations 3 3 2 11 C1E Support Select Enabled to use the feature of Enhanced Halt State C1E significantly reduces the CPU s power consumption by reducing the CPU s clock cycle and voltage during a Halt State The options are Disabled and Enabled 3 3 2 12 Intel C STATE Tech If enabled C State is set by the system automatically to either C2 C3 or C4 state The options are Disabled and Enabled 3 3 2 13 C State package limit setting Available when Intel C State Tech is enabled If set to Auto the AMI BIOS will automatically set the limit on the C
24. if Block Mode is not used Block Mode allows transfers of up to 64 KB per interrupt Select Disabled to allow data to be transferred from and to the device one sector at a time Select Auto to allow data transfer from and to the device occur multiple sectors at a time if the device supports it The options are Auto and Disabled PIO Mode The IDE PIO Programmable I O Mode programs timing cycles between the IDE drive and the programmable IDE controller As the PIO mode increases the cycle time decreases The options are Auto 0 1 2 3 and 4 Select Auto to allow the AMI BIOS to automatically detect the PIO mode Use this value if the IDE storage drive support cannot be determined Select 0 to allow the AMI BIOS to use PIO mode 0 It has a data transfer rate of 3 3 MBs Select 1 to allow the AMI BIOS to use PIO mode 1 It has a data transfer rate of 5 2 MBs Select 2 to allow the AMI BIOS to use PIO mode 2 It has a data transfer rate of 8 3 MBs Select 3 to allow the AMI BIOS to use PIO mode 3 It has a data transfer rate of 11 1 MBs 3 15 Themis Computer RES 32XR3 FIO Installation Manual 3 16 Select 4 to allow the AMI BIOS to use PIO mode 4 It has a data transfer bandwidth of 32 Bits Select Enabled to enable 32 Bit data transfer DMA Mode Select Auto to allow the BIOS to automatically detect IDE DMA mode when the IDE storage drive support cannot be determined Select SWDMAO to allow the BIOS to use Single
25. inadeguate In addition the 12V 8 pin power connections are also reguired to ensure adeguate power supply to the system Also your power supply must supply 1 5A for the Ethernet ports Caution To prevent damage to your power supply or motherboard please use a power supply that contains a 24 pin and two 8 pin power connectors Be sure to connect these power connectors to the 24 pin and the two 8 pin power connectors on your motherboard for adeguate power supply to your system Failure to do so will void the manufacturer warranty on your power supply and motherboard Itis strongly recommended that you use a high guality power supply that meets ATX power supply Specification 2 02 or above It must also be SSI compliant for more information please refer to the web site at http www ssiforum org Additionally in areas where noisy power transmission is present you may choose to install a line 1 13 Themis Computer RES 32XR3 FIO Installation Manual filter to shield the computer from noise It is recommended that you also install a power surge protector to help avoid problems caused by power surges 1 8 Super I O The disk drive adapter functions of the Super VO chip include a floppy disk drive controller that is compatible with industry standard 82077 765 a data separator write pre compensation circuitry decode logic data rate selection a clock genera tor drive interface control logic and interrupt and DMA logic
26. may be factors contributing to this condition but the CPU is still within its normal operating state and below the CPU Tem perature Tolerance The motherboard fans and CPU will run normally as con figured in the BIOS The fans may adjust to a faster speed depending on the Themis Computer RES 32XR3 FIO Installation Manual Fan Speed Control settings User intervention No action is reguired However consider checking the fans and the chassis ventilation for blockage e High The processor is running hot This is a caution level since the CPU s Temperature Tolerance has been reached or has been exceeded and may activate an overheat alarm The system may shut down if it continues for a long period to prevent damage to the CPU User intervention If the system buzzer and Overheat LED has activated take action immediately by checking the system fans chassis ventilation and room temperature to correct any problems Notes 1 The CPU thermal technology that reports absolute temperatures Cel sius Fahrenheit has been upgraded to a more advanced feature by Intel in its newer processors The basic concept is each CPU is embedded by unigue tem perature information that the motherboard can read This Temperature Threshold or Temperature Tolerance has been assigned at the factory and is the baseline on which the motherboard takes action during different CPU temperature conditions 1 e by increasing F
27. on and off 2 1 Installation Procedures components Wear an antistatic wrist strap and use an ESD protected mat Store ESD sensitive components in antistatic bags before placing them on any surface Handle all IC cards by the front panel or edges only H Caution Use industry standard ESD grounding technigues when handling all To install or replace a storage drive fan or power supply skip the next section and proceed directly to page 2 9 page 2 11 or page 2 12 respectively Replacement of motherboard components requires removal of the protective cover 2 1 1 Remove Protective Top Cover To access a motherboard component open the RES 32XR3 FIO as follows Themis Computer RES 32XR3 FIO Installation Manual 1 Loosen the four captive Phillips screws holding the protective top access cover to the rear of the RES 32XR3 FIO chassis see A Figure 2 1 2 Both the front and sides of the cover have flat hooks or tabs underneath that fit under slots on the chassis top edges see B Figure 2 1 Remove the cover by sliding it toward the rear until it is free of these chassis slots 3 Store the cover in a safe place until it is replaced Rear View A Loosen the 4 captive access cover screws Chassis slot Chassis slot Left side top edge B and slide the top cover toward the rear until the top hooks and tabs clear all chassis slots Figure 2 1 Remove the RES 32XR3 FIO Protective Access Cover 4 Procee
28. the enclosure of such a drive is opened invisible laser radiation is emitted Do not allow yourself to be exposed to this radiation The laser system meets the code of Federal Regulations 21 CFR 1040 for the USA and Canadian Radiation Emitting Devices Act REDR C 1370 Electrostatic Discharge ESD A sudden discharge of electrostatic electricity can destroy static sensitive devices or micro circuitry Proper packaging and grounding techniques are necessary pre cautions to prevent damage Always take the following precautions 1 Transport boards in static safe containers such as boxes or bags 2 Keep electrostatic sensitive parts in their containers until they arrive at static free stations 3 Always be properly grounded when touching a sensitive board component or assembly 4 Store electrostatic sensitive boards in protective packaging or on conductive foam Grounding Methods Guard against electrostatic damage at workstations by following these steps 1 Cover workstations with approved anti static material Provide a wrist strap connected to a work surface and properly grounded tools and equipment Themis Computer RES 32XR3 FIO Installation Manual 2 Use anti static mats heel straps or air ionizers to give added protection 3 Handle electrostatic sensitive components boards and assemblies by the case or the PCB edge 4 Avoid contact with pins leads or circuitry 5 Turn off power and input signa
29. the installation program where to install Red Hat Enterprise Linux This is done by defining mount points for one or more drive partitions in which Red Hat Enterprise Linux is installed You may also need to create and or delete partitions at this time see Figure C 9 on page C 7 Click Next C 7 Themis Computer RES 32XR3 FIO Installation Manual C 2 10 Step 10 RED HAT ENTERPRISE LINUX 5 D The GRUB boot loader will be installed on dev sda No boot loader will be installed You can configure the boot loader to boot other operating systems it will allow you to select an operating system to boot from the list To add additional operating systems which are not automatically detected click Add To change the operating system booted by default select Default by the desired operating system Default Label Device Add Red Hat Enterprise Linux Server tdev VoiGroupo LogVo100 Edit Delete A boot loader password prevents users from changing options passed to the kernel For greater system security It is recommended that you set a password Use a boot loader password Configure advanced boot loader options Dretease Notes ama Ene Figure C 10 Setting Up Boot Loader Step 10 Once you have configured your partitions set up a boot loader If you select No Boot Loader will be Installed you Il need to use a third party boot loader such as Partition Magic or Microsoft s TLDR If you want to set
30. the storage drive from the chassis hold it at the bot tom to prevent it from falling and damaging the drive A Insert key into barrel lock and turn 45 degrees clockwise B push the latch lock C and pull drive out with the latch handle paul e 10 wet E S petits Latch Handle Figure 2 9 RES 32XR3 FIO Storage Drive Removal 2 1 5 2 Storage Drive Installation To install a storage drive 1 Make sure the latch handle of the drive to be installed is in the open position 2 Properly orient the new drive and insert it into the vacant drive slot If the drive cannot be inserted into the slot rotate it 180 degrees 3 Push the drive toward the rear DO NOT CLOSE the latch handle while push ing until the drive is flush with the front of the chassis The handle will swing closed when it comes into contact with the RES 32XR3 FIO chassis 2 10 Themis Computer Installation and Operation Installation Procedures 4 When the drive is fully inserted in its slot insert the key into the barrel lock and turn it 45 degrees counter clockwise The drive is now locked chassis If the handle is closed before the drive is fully inserted the latch mechanism D Caution When in the closed position the latch handle secures the drive to the may not fully engage to secure the drive 2 1 6 Removable 120 mm Fan The RES 32XR3 FIO contains three high speed 120 mm fans All fans are remo
31. within a 3RU high 5 25 form factor 16 40 6 cm deep and 17 07 43 4 cm wide which with mounting brackets fits a 19 wide rack Major features of the RES 32XR3 FIO motherboard are listed in Table 1 2 Table 1 2 RES 32XR3 FlO Major Features Processors e Two Quad Core Intel 5600 5500 Series Xeon Processors Intel 5520 Tylersburg chipset Chipset e ICH10R 2x IOH 36D e 18 DIMMs Memory e up to 192 GB 1333 1066 800 MHz DDR3 ECC Registered Memory Expansion Slots 3 x16 PCI E 2 0 4 x8 PCI E 2 0 6 SATA slots RAID 0 1 5 10 support Win RAID 0 1 10 Disk Drive Options support Linux PS 2 Keyboard Mouse Ports 6 USB 2 0 front ports USB 0 thru USB 5 plus 1 on motherboard plus 2 internal headers 3ports Total of 10 USB 2 0 compliant ports 1 Serial port COM 1 2 RJ45 LAN ports Gigabit Ethernet LAN 1 and LAN 2 VGA port Audio 7 1 HD Audio mike in line in side and back sur round CEN LFE front IPMI 2 0 with virtual media over LAN and KVM over LAN support via dedicated RJ45 IPMI LAN port Front I O Themis Computer Overview and Specifications Overview X8DAH F Block Diagram PCI E X4 SLOT 5 sendin PCI E X8 SLOT 7 dk IOH 36D VOH 36D Ports 384 Intel 5520 Intel 5520 bh PCI E X8 SLOT 4 KARI Ports 5805 fa Ports 78 8 Ports 98 10 PCI E X16 SLOT 6f Leg LAN2 ig pos 33MHZ il Al LPC BUS Reien oero 18 RM
32. 1 19 B 1 installation kit B 2 screw locations B rack mount slides optional 2 5 Red Hat Enterprise Linux C Re Packaging for Shipment E Re Packing Instructions E RES 32XR3 FIO 1 1 reset switch 1 4 RES x2XR3 Manual Matrix AC and DC Power Supplies xx xxi xxii S Safety Instructions iv Electrostatic Discharge ESD v Instructions for the Lithium Battery vi Operation of Laser Source Devices v screw locations for rack mount slides B serial ports A 2 Shock 2 17 shock xxii Themis Computer Index Shock endurance 5 Sidebars xxiii slides rack mount xxii Specifications Altitude 7 15 BTU Rating 6 Dimensions 7 15 Electrostatic Discharge 1 17 Input Current 1 16 Input Frequency 1 16 Input Leakage 16 Input Power 1 16 Input VA Rating 1 16 Input Voltage 1 16 Maximum Wet Bulb 5 Packaging and Shipping 18 Plug Type 1 16 Power Factor 1 16 Relative Humidity 5 Shock 2 17 Temperature 5 Weight 7 15 storage drives 2 7 installation 2 70 removal 2 9 Super I O 1 14 system LEDs 1 5 NIC Gb Ethernet 8 Overheat 1 8 Power 1 8 Power Fail LED 1 8 SATA storage drives SD 8 System Power 1 16 T Technical Support 8 temperature xxii TTYA COM1 A 2 Turning the System Off 2 17 Turning the System On 2 16 U USB ports A 2 USB Serial Ports 9 V VGA connector 2 16 VGA Connector Pin Signals A 3 VGA graphics port A 3 W Warnings xxiii Website Information xxiii X Xeon process
33. 1 7 3 3 1 8 3 3 1 9 AddOn ROM Display Mode This sets the display mode for Option ROM The options are Force BIOS and Keep Current Bootup Num Lock This feature selects the Power on state for the Numlock key The options are Off and On PS 2 Mouse Support This feature enables support for the PS 2 mouse The options are Disabled Enabled and Auto Wait For F1 If Error This forces the system to wait until the F1 key is pressed if an error occurs The options are Disabled and Enabled Hit Del Message Display This feature displays Press DEL to run Setup during POST The options are Enabled and Disabled Watch Dog Function If enabled the Watch Dog Timer will allow the system to reboot when it is inactive for more than 5 minutes The options are Enabled and Disabled Restore on AC Power Loss Use this feature to set the power state after a power outage Select Power Off for the power to remain off after a power loss Select Power On for the power to be turned on after a power loss Select Last State to allow the system to resume its last state before a power loss The options are Power On Power Off and Last State 3 3 1 10 Interrupt 19 Capture Interrupt 19 is the software interrupt that handles the boot drive function When this item is set to Enabled the ROM BIOS of the host adaptors will capture Interrupt 19 at boot and allow the drives that are attached to these host adaptors to function as bootable drives
34. 2XR3 FIO supports two RJ45 Gigabit Ethernet LAN port connectors LAN 1 and LAN 2 each with two embedded LEDs see Figure A 4 Pinout signal descriptions are listed in Table A 5 Link Speed Network Traffic Figure A 4 Ethernet Connector Type RJ45 Table A 5 RJ45 Ethernet Pinout Signals Pin Signal Name Pin Signal Name 1 TRDO 5 TRD2 2 TRDO 6 TRD1 3 TRD1 7 TRD3 4 TRD2 8 TRD3 e The color of the left LED indicates the LAN connection speed Off 10 MHz Green 100 MHz Amber 1 GHz e The right LED when lit indicates LAN activity network traffic A 6 IPMI Dedicated LAN Port The single IPMI dedicated Ethernet LAN port on the RES 32XR3 FIO front I O panel has identical pinout and signal descriptions as the LAN 1 and LAN 2 Ethernet ports described in the previous Section A 5 Gigabit Ethernet LAN Ports A 4 Themis Computer Appendix Rack Mount Slide Installation An optional set of two rack mount slides left side and right side is available for all RES 32 systems and should be ordered at the time of purchase The RES 32XR3 FIO chassis contains six threaded screw holes on each side to accommodate 8 32 size screws included with the rack mount slide kit steel slides require four mount ing holes and aluminum slides require three mounting holes see Figure B 1 a 13 000 ml Mounting Bracket a 6 000 m
35. 3 3 16 This feature returns the channel status for the Channel Number selected above Channel Number is OK or Wrong Channel Number IP Address Source Select the source of this machine s IP address If Static is selected you will need to know and enter manually the IP address of this machine below If DHCP is selected the BIOS will search for a DHCP Dynamic Host Configuration Protocol server in the network it is attached to and request the next available IP address The options are DHCP and Static The following items are assigned IP addresses automatically if DHCP is selected under IP Address Source above IP Address Enter the IP address for this machine This should be in decimal and in dotted quad form Oe 192 168 10 253 The value of each three digit number separated by dots should not exceed 255 as shown in the screen below Subnet Mask Subnet masks tell the network which subnet this machine belongs to The value of each three digit number separated by dots should not exceed 255 Gateway Address This is the IP address of the gateway in the network This is usually a router Mac Address The BIOS will automatically enter the Mac address of this machine however it may be over ridden Mac addresses are 6 two digit hexadecimal numbers Base 16 0 9 A B C D E F separated by dots 1 e 00 30 48 D0 D4 60 3 27 Themis Computer RES 32XR3 FIO Installation Manual 3 3 17 SET PEF Configu
36. 3 4 1 S pervisot Password EE 3 30 342 User PassWord WEE 3 30 3 4 3 Change Supervisor DEE 3 30 3 4 4 User Access Level Available when Supervisor Password is set as above 3 31 3 4 5 Change User Password Available when a User Password is installed 3 31 3 4 6 Clear User Password Available only when User Password is installed 3 31 3 4 7 Password Check Available when a password is installed 3 31 3 4 8 Boot Sector Virus Protection ege 3 31 3 07 Boot C ONM Ul AMON EE 3 32 291 Boot Dev e e e E 3 32 Dee SUF AE ITI VCS Eege 3 32 3 3 3 Removable RE E 3 33 3 94 CPP D Drives sisalikest cele sable las ade ead ie a 3 33 3 6 ERIE OPONSE E EER A UNENEE 3 34 301 Save HAN Ses RE EE 3 34 3 6 2 Discard Changes and Exit E 3 34 3 6 3 Discard Changes sinsir ged E S AARETE e E ka 3 35 3 0 4 Lead Optimal Leger ee E 3 35 3 6 5 Load Fail Safe Defaults E 3 35 3 1 BIOS REGOVETV crssieionie anio n a E E R kka E S 3 35 3 7 1 Boot Sector Recovery from a USB Device AA 3 36 3 7 2 Boot Sector Recovery from an IDE CD ROM AAA 3 36 3 7 3 Boot Sector Recovery from a Serial Port Serial Flash 3 36 SE E Ge Re E 3 36 3 8 BIOS Error Beep Codes 1 4 j isi at isduinate iudaimaasialanas aaasta au e ae kaetav 3 40 Appendix A Connector Pinout EE A 1 A l PS 2 Keyboard and Mouse sscis ccsssaeiesacesivacaeeatecsacsesessaceasvncceae Sedeaetadeuvcccsaboesenterevs A 1
37. 6 Step 8 In tallation requires parlioning of your hard drive By default a partitioning layout is chosen which is reasonable for most users You can either choose be neon bln oe w n sass Remove all partitions on selected drives and create default layout Remove linux partitions on selected drives and create defaust layout Use free space on selected drives and create default layout Create custom layout sg Advanced storage configuration Reylew and modify partitioning layout B Belease Notes Back SS Next Figure C 8 Reviewing Option Step 8 Create default layout allows you to have some control concerning what data is removed if any from your system Your options are e Remove all partitions on selected drives and create default layout select this option to remove all partitions on your storage drive s this includes partitions cre ated by other operating systems such as Windows VFAT or NTFS partitions e Remove Linux partitions on selected drives and create default layout select this option to remove only Linux partitions partitions created from a previous Linux installation This does not remove other partitions you may have on your storage drive s such as VFAT or FAT32 partitions Use free space on selected drives and create default layout select this option to retain your current data and partitions assuming you have enough free space available on your storage drive s Using your mouse
38. 750 watts capacity each that auto range single phase AC input from 100 to 240 VAC 47 to 63 Hertz sources Filtered and fused internal AC is supplied to each power sup ply from a front mounted power connection Two optional N 1 redundant DC power supplies of 750 watts each may be substi tuted for the AC power supplies This should be specified at the time of your order Themis Computer Overview and Specifications Specifications 1 10 2 2 Output Voltage The RES 32XR3 FIO power supply provides output voltages that are split between 3 3V 5V 5Vsh 12V and 12V rails 1 10 3 Environmental 1 10 3 1 Shock The RES 32XR3 FIO is designed to survive an elevated shock environment All structural components are welded together enabling the system to survive a maxi mum 3 axis shock load of 35G at 25 ms duration 1 10 3 2 Electrostatic Discharge The RES 32XR3 FIO is designed to tolerate electrostatic pulses up to 15 kilovolts KV with no impact on system operation Themis Computer RES 32XR3 FIO Installation Manual 1 11 Packaging and Shipping The RES 32XR3 FIO is packaged in a reusable shipping container Approximate weight of an empty container and two AC power cords is 8 8 pounds 4 kg The approximate weight of a RES 32XR3 FIO loaded with 2 storage drives two PCI cards a CD RW DVD ROM drive and two power supplies is under 27 pounds 12 3 kg The approximate weight of a manual and associat
39. 8 Themis Computer Installation and Operation Installation Procedures 2 1 4 2 Installing a Lithium Battery Perform the following steps to insert a new lithium battery 1 Tilt the replacement battery into the empty socket so that it is angled under the battery latch see B Figure 2 7 2 Carefully press down on the battery until it clicks firmly into place 2 1 5 SATA Storage Drive The accessory kit shipped with your RES 32XR3 FIO contains two barrel lock keys This provides you the option of unlocking locking the storage drives see Figure 2 8 Drive0 pdn Drivel IMI y Tie Cp Drive Lock Latch Lock Button one per drive Figure 2 8 Unlocking the RES 32XR3 FIO Storage Drives Front Doors Removed 2 1 5 1 Storage Drive Removal Perform the following steps to remove and install a storage drive see Figure 2 8 1 Make sure the system is powered off see Operation on page 2 15 2 Locate the drive to be removed 3 Insert the barrel lock key into the storage drive you want to remove and turn it 45 degrees clockwise presuming the storage drive is locked see A in Figure 2 9 on page 2 10 2 9 Themis Computer RES 32XR3 FIO Installation Manual 4 Firmly push in the latch lock until the latch handle releases away from the drive see B in Figure 2 9 5 Grab the latch handle and pull the drive completely away from its slot see C in Figure 2 9 Caution When pulling
40. C 2 7 Step7 RED HAT ENTERPRISE LINUX 5 instaltation requires partitioning of your hard drive By default a partitioning layout is chosen which is reasonable for most users You can either choose to use this or create your own Remove linux partitions on selected drives and create default layout gt Select the drive s to use for this Installation Advanced storage configuration F Reylew and modify partitioning layout _ Betease Notes Back Next Figure C 7 Partitioning Step 7 Partitioning allows you to divide your storage drive into isolated sections where each section behaves as its own storage drive Partitioning is particularly use ful if you run multiple operating systems On this screen you can choose to create the default layout or choose to manually par tition using the Create custom layout option of Disk Druid The first three options allow you to perform an automated installation without hav ing to partition your drive s yourself If you do not feel comfortable with partition ing your system it is recommended that you do not choose to create a custom layout and instead let the installation program partition for you You can configure an iSCSI target for installation or disable a dmraid device from this screen by clicking on the Advanced storage configuration button see Figure C 7 on page C 5 Click Next to continue C 5 Themis Computer RES 32XR3 FIO Installation Manual C
41. Computer C Red Hat Enterprise Linux 5 Installation C 2 13 Installation Step 13 Edit interface etho Configure eth0 Advanced Micro Devices AMD 79c970 PCnet32 LANCE Hardware address 00 0C 29 42 45 96 F luse dynamic IP configuration DHCP F Enable IPv4 support Enable IPv6 support Activate on boot Address Prefix Netmask X cancei Pox Figure C 13 Edit Interface Pop Up Screen Step 13 From the Edit Interface pop up screen you can choose to configure the IP address and Netmask for IPv4 Prefix for IPv6 of the device via DHCP or manu ally if DHCP is not selected and you can choose to activate the device at boot time If you select Activate on boot your network interface is started when you boot see Figure C 13 on page C 11 If you do not have DHCP client access or you are unsure what to provide here please contact your network administrator Click OK Themis Computer C 11 RES 32XR3 FIO Installation Manual C 2 14 Step 14 RED HAT ENTERPRISE LINUX 5 Please click into the map to choose a region America New_ York Easter Time System clock uses UTC DB Retease Notes Back i Next Figure C 14 Selecting Time Zone Step 14 Set your time zone by selecting the city closest to your computer s physical location Click on the map to zoom in to a particular geographical region of the world see Figure C 14 on page C 12 From here there are two ways for yo
42. E LINUX 5 Figure C 21 Login Screen Step 21 Eventually a 1ogin prompt or a GUI login screen appears if you installed the X Window System and chose to start X automatically see Figure C 21 on page C 18 C 2 22 Step 22 OB Applications Places System GHGS 2 45 PM C el E r Figure C 22 Ready to use the Desktop Step 22 Once logged in you are ready to use the desktop see Figure C 22 on page C 18 Themis Computer Appendix Optional Remote On Off Switch D 1 Remote On Off Configuration Customers interested in installing an optional switch from which to remotely turn the RES 32XR3 FIO on or off are able to order a Remote On Off Switch module that is easily installed in an available storage drive bay see Figure D 1 which shows the Remote On Off Switch installed in an RES 32XR3 FIO system ieee Figure D 1 Remote On Off Switch Module D 1 Themis Computer RES 32XR3 FIO Installation Manual D 2 D 3 D 2 The Remote On Off Switch module is installed after first removing one of the exist ing RES 32XR3 FIO storage drives any except the boot drive then installing a cable with a standard male DB9 connector at one end and an On Off switch an LED is optional at the other end When operational if the RES 32XR3 FIO is turned OFF pressing the remote switch ON will turn the system on If the RES 32XR3 FIO is turned ON pressing the switch OFF for less than 4 sec onds will
43. E Slot 1 x8 PCI E Slot 2 x16 PCI E Slot 3 x8 PCI E Slot 4 x8 in x16 slot PCI E Slot 5 PCI E x4 in x8 slot PCI E Slot 6 x16 PCI E Slot 7 x8 3 18 3 3 6 7 Onboard LAN Option ROM Select m imeenenmeeeenee 3 18 3 3 6 8 Load Onboard LAN1 Option ROM Load Onboard LAN2 KODUGA ROM KAOS ASS 3 18 3 3 6 9 Boot Graphics Adapter Priority 2 0 0 0 ceeceeeeeceeereeeeeeeeceteeeesees 3 18 3 3 7 Super IO Device Configuration zerreeedgdeeEA Dead ee 3 18 3 3 7 1 Serial Port Address Serial Port Address 3 18 3 3 7 2 Onboard Floppy Controller AAA 3 19 Themis Computer Table of Contents 3 3 8 Remote ACCESS Configuration ses csveccasaisccties heave hes dete Socestedquastiendaceaieecbases 3 19 33 81 ne 3 19 E NUDE E dili kus alalisi aes ent taste 3 19 e EE EE mkm sadamas 3 19 3 3 8 4 Flow Control sessirnir teinne a a a aias 3 19 3 3 8 5 Redirection After BIOS POST gedeien 3 19 3 3 9 6 Termina KE 3 20 3 3 8 7 VT UTF8 Combo Key Support s icsssiseiesssssdccsadeoatcovassdesertcassnces 3 20 3 3 8 8 Sredir Memory Display Delay eiemeeeenneenenneeoenae 3 20 3 3 9 Hardware Health luese 3 20 3 3 9 bk CPU Over heal Alari soninn aaa laim eins 3 20 3 3 9 2 CPU 1 Temperature CPU 2 Temperature System Temperature 3 21 9 34 Ee 3 23 3 3 10 ACPI EE de EE 3 23 3 3 10 1 High Performance Event Timer smeeenmeenenneeenee 3 23 SE Ee E
44. FIO Installation Manual B 4 Themis Computer Appendix Red Hat Enterprise Linux 5 Installation C 1 Introduction Welcome to the Red Hat Enterprise Linux Installation Guide This guide contains useful information to assist you during the installation of Red Hat Enterprise Linux via DVD device from fundamental concepts such as installation preparation to the step by step installation procedure C 1 Themis Computer RES 32XR3 FIO Installation Manual G2 Installation C 2 1 Stepi RED HAT ENTERPRISE LINUX 5 To install or rade in graphical mode press the To 11 Use the funi Figure C 1 Power On after Linux DVD is Inserted into Drive Step 1 Insert the Redhat Enterprise Linux 5 DVD and Power on the system you will see the first installation screen with a boot prompt press ENTER to begin installation see Figure C 1 on page C 2 C 2 2 To begin testing the CD media before installation press OK Choose Skip to skip the media test and start the installation Figure C 2 Skip Key Step 2 Press the tab key to move focus to the Skip key then press the Enter key to continue to the Welcome screen See Figure C 2 on page C 2 C 2 Themis Computer C Red Hat Enterprise Linux 5 Installation C 2 3 C 2 4 Installation Step 3 RED HAT ENTERPRISE LINUX 5 RED HAT ENTERPRISE LINUX 5 Dipen notes 8 Figure C 3 Welcome Scree
45. If set to Enabled the hardware prefetcher will prefetch streams of data and instruc tions from the main memory to the L2 cache in the forward or backward manner to improve CPU performance The options are Disabled and Enabled Adjacent Cache Line Prefetch Available when supported by the CPU The CPU fetches the cache line for 64 bytes if this option is set to Disabled The 3 7 Themis Computer RES 32XR3 FIO Installation Manual 3 8 3 3 2 6 3 3 2 7 3 3 2 8 3 3 2 9 CPU fetches both cache lines for 128 bytes as comprised if Enabled Intel Virtualization Technology Available when supported by the CPU Select Enabled to use the feature of Virtualization Technology to allow one platform to run multiple operating systems and applications in independent partitions creat ing multiple virtual systems in one physical computer The options are Enabled and Disabled Note If there is any change to this setting you will need to power off and restart the system for the change to take effect Please refer to Intel s website for detailed information Execute Disable Bit Capability Available when supported by the OS and the CPU Set to Enabled to enable the Execute Disable Bit which will allow the processor to designate areas in the system memory where an application code can execute and where it cannot thus preventing a worm or a virus from flooding illegal codes to overwhelm the processor or damage the system
46. Installation The following procedure explains how to install the DDR3 Memory Modules 1 Loosen and remove the screws securing the air flow deflector and PCI card retainer bracket in the following manner see Figure 2 2 e Screw A Unscrew the captive screw marked A from it s socket remove the PCI card retainer bracket and store it in a safe place PCI Card Retainer Brackets Figure 2 2 Remove the Air Flow Deflector Screws Themis Computer Installation and Operation Branch 0 Branch 1 Branch 2 Branch 0 Branch 1 Branch 2 P2 DIMM 1A P2 DIMM 2A P2 DIMM 3A P2 DIMM 1B P2 DIMM 2B P2 DIMM 3B P2 DIMM 1C P2 DIMM 2C P2 DIMM 3C P1 P1 P1 P1 p p p p p ch sch ch sch sch DIMM 1A DIMM 2A DIMM 3A DIMM 1B DIMM 2B DIMM 3B DIMM 1C DIMM 2C DIMM 3C 2 Installation Procedures e Screw B Remove the eight screws marked B in Figure 2 2 on page 2 4 which will free the air flow diverter so that it can be removed from the system After the air flow diverter has been removed the memory module slots will be exposed see Figure 2 3 ET E an LS SR a 5 Hegg Ee Ach ete hrs mm s PRUS K a DU S i 8 1 i ti a TH Figure 2 3 Memory Module Slot Locations If a module is already seated in the slot you have selected for installation remove it by gently pressing down and outward on the latches at both ends of the slot see Figure 2 4 on page 2 6 the
47. P HGUONINE 2 eissee feet Eed EE edd kd A aan aaa id C 5 Figure C 8 Reviewing Option sii mllssgevanvsvanvvak vedada EENS EES C 6 Figure C 9 Creating a Custom Layouts 2 2 tes area aa C 7 Figure C 10 Setting Up Boot Loader e ama ea ea eae ae C 8 Figure C 11 Master Boot Record MBR cceecceescesseceteceeeceeeeeeaeecaaeceaeeeeeeeaeceeeneeeeeaeees C 9 Figure C 12 Network Devices Tasen tege deevabelgrastircccteled kad aslalasi rnu ut imvtasa tikud keik C 10 Figure C 13 Edit Interface Pop Up Screen C 11 Figure C 14 Selecting Time Zone ruumikust C 12 Figure C 15 Setting Up Root Account and Password C 13 Figure C 16 Package Installation Default Screen oo eee ee eeeeneeeeeesecesecneeeaeeeneeseeseeenaes C 14 Fiore C 17 Optional Eege C 15 Figure C 18 Option to Review or Continue 00 cee eeceeecesecsseeseeeseeseeeeceaecneeeaeeeneeeeesaeenaes C 16 Figure C 19 Installation Bees eidrr eege ENER ANEN NEE NEEN C 16 Figure C 20 Installation is Complete issvvttevpaev aive kadude da iaki nt dpal vv atleedi C 17 Fig re 21 terme Ee E GE Ee C 18 xvi Themis Computer Table of Contents Figure C 22 Ready to use the Desktopi maausu sd kka ut C 18 Figure D 1 Remote On Off Switch Module D 1 Figure E 1 Packaging Components eieisssiesceecazceesudcvscacacsdsnques seasngacedabshneaadenaadaveaneccdacsuvanecs E 2 Figure E 2 Order of eelere E 3 List of Tables Table 1 RES x2XR3 Manual Matrix AC and DC Power Supplies XX
48. SS A SA SA A SAA SS A SA SAD A SA SS DS SASS Ending FLASH Recovery FLASH Update completed successfully Rebooting Figure 3 8 Flash Recovery 8 Once remote BIOS flash is completed the system will reboot Note AMIBIOS Serial Flash will work with any terminal communications pro gram that supports VT 100 and XModem protocols including protocols designed for GNU LINUX amp BSD operating systems such as minicom It is recommended that the terminal program be configured to use the CR LF style of line termina tion 3 39 Themis Computer RES 32XR3 FIO Installation Manual 3 8 BIOS Error Beep Codes During the POST Power On Self Test routines which are performed each time the system is powered on errors may occur Non fatal errors are those which in most cases allow the system to continue the boot up process The error messages normally appear on the screen Fatal errors will not allow the system to continue the boot up procedure If a fatal error occurs you should consult with your system manufacturer for possible repairs These fatal errors are usually communicated through a series of audible beeps The numbers on the fatal error list correspond to the number of beeps for the correspond ing error BIOS Error Beep Codes Beep Code Error Message Description 1 beep Refresh Circuits have been reset Ready to power up 5 short beeps 1 long beep Memory error No mem
49. State package register The options are Auto C1 C3 C6 and C7 3 3 2 14 C1 Auto Demotion When enabled the CPU will conditionally demote C3 C6 or C7 requests to Cl based on un core auto demote information The options are Disabled and Enabled 3 3 2 15 C3 Auto Demotion When enabled the CPU will conditionally demote C6 or C7 requests to C3 based on un core auto demote information The options are Disabled and Enabled 3 3 3 DCA Technology This feature accelerates the performance of TOE devices For this motherboard Note A TOE device is a specialized dedicated processor that is installed on an add on card or a network card to handle some or all packet processing of this add on card the TOE device is built inside the ESB 2 South Bridge chip This feature is sup ported only by some types of processors De Intel Nehalem WS 1S The options are Enabled and Disabled 3 3 3 1 DCA Prefetch Delay A DCA Prefetch is used with TOE components to prefetch data in order to shorten 3 9 Themis Computer RES 32XR3 FIO Installation Manual 3 3 4 3 3 4 1 3 3 4 2 3 3 4 3 3 3 4 4 3 3 4 5 execution cycles and maximize data processing efficiency Prefetching too fre quently can saturate the cache directory and delay necessary cache accesses This feature reduces or increases the frequency the system prefetches data The options are 8 16 32 40 48 56 64 72 80 88 96 104 112 120
50. W83627DHG LAN3 3rd LAN I ini 2 VGA COM2 dest Internal Figure 1 2 X8DAH F Motherboard Block Diagram 1 3 Themis Computer RES 32XR3 FIO Installation Manual 16 40 6 cm deep Power Supply Latch Lock AC Power Socket 3 prong NEMA 15 1 4 PCI Express 2 0 x8 slot PCI Express 2 0 x16 slot CD RW DVD ROM PCI Express 2 0 x8 slot Combo Drive System Power itch PCI E 2 0 x8 sl ee Power Supplies ON OFF Switch PCI Express 2 0 x8 slo Slot 1 PS1 3 1 A ay EW e ll i y e PCI Express 2 0 x8 in x16 slot PCI Express 2 0 x4 in x8 slot PCI Express 2 0 x16 slot Slot 7 I O Panel see Figure 1 5 page 1 7 Storage Drives 17 07 43 4 cm 19 with Rack Mounts Figure 1 3 External Features of RES 32XR3 FIO Front The RES 32XR3 FIO front panel houses three removable storage drive bays see Figure 1 3 Six SATA drives are supported by the X8DAH F motherboard Addi tional drives may be supported by an installed PCI E card Drive requirements should be specified at the time the system is purchased Also included on the front panel is a reset switch and the system power button and LEDs see Figure 1 5 on page 1 7 I O faceplates for seven PCI cards graphics RAID NIC etc two AC power supplies with latch locks and power cord sockets and all I O connectors see Figure 1 5 on page 1 7 Major features of the RES 32XR3 FIO are described in Table 1 3 Major interna
51. Word DMA mode 0 It has a data transfer rate of 2 1 MBs Select SWDMA1 to allow the BIOS to use Single Word DMA mode 1 It has a data transfer rate of 4 2 MBs Select SWDMA2 to allow the BIOS to use Single Word DMA mode 2 It has a data transfer rate of 8 3 MBs Select MWDMA0 to allow the BIOS to use Multi Word DMA mode 0 It has a data transfer rate of 4 2 MBs Select MWDMAI1 to allow the BIOS to use Multi Word DMA mode 1 It has a data transfer rate of 13 3 MBs Select MWDMA2 to allow the BIOS to use Multi Word DMA mode 2 It has a data transfer rate of 16 6 MBs Select UDMA0 to allow the BIOS to use Ultra DMA mode 0 It has a data transfer rate of 16 6 MBs It has the same transfer rate as PIO mode 4 and Multi Word DMA mode 2 Select UDMA to allow the BIOS to use Ultra DMA mode 1 It has a data transfer rate of 25 MBs Select UDMA2 to allow the BIOS to use Ultra DMA mode 2 It has a data transfer rate of 33 3 MBs Select UDMA to allow the BIOS to use Ultra DMA mode 3 It has a data transfer rate of 66 6 MBs Select UDMA4 to allow the BIOS to use Ultra DMA mode 4 It has a data transfer rate of 100 MBs Select UDMAS to allow the BIOS to use Ultra DMA mode 5 It has a data transfer rate of 133 MBs Select UDMAS to allow the BIOS to use Ultra DMA mode 6 It has a data transfer rate of 133 MBs The options are Auto SWDMAn MWDMAn and UDMAn Themis Computer BIOS Setup Utility 3 3 6 3 3 6 1 3 3 6 2 3 3
52. an speed triggering the Overheat Alarm etc Since CPUs can have different Temperature Tolerances the installed CPU can now send information to the motherboard what its Tem perature Tolerance is and not the other way around This results in better CPU thermal management Supermicro has leveraged this feature by assigning a temperature status to certain thermal conditions in the processor Low Medium and High This makes it easier for the user to understand the CPU s temperature status rather than by just simply seeing a temperature reading e 25 C The information provided above is for your reference only For more information on thermal management please refer to Intel s Web site at www Intel com System Temperature The system temperature will be displayed in degrees in Celsius and Fahrenheit as it is detected by the BIOS Fan Speed Readings This feature displays the fan speed readings from Fan through Fans Themis Computer BIOS Setup Utility Advanced Setup Configurations Fan Speed Control Modes This feature allows the user to decide how the system controls the speeds of the onboard fans The CPU temperature and the fan speed are correlative When the CPU on die temperature increases the fan speed will also increase and vice versa Select Workstation if your system is used as a Workstation Select Server if your system is used as a Server Select Full Speed to disable the fan speed control f
53. anel see Figure A 2 TTYA COM 1 COM 1 pinout signal descriptions are listed in Table A 3 1 5 GG 6 9 Figure A 2 COM 1 Serial Connector Pinout Table A 3 COM 1 Serial Connector Pinout Signal Descriptions Pin Signal Name Pin Signal Name Pin Signal Name 1 DCD 4 DTR 7 RTS 2 RXD 5 GND 8 CTS 3 TXD 6 DSR 9 RI A 2 Themis Computer Connector Pinouts VGA Display Port A 4 VGA Display Port The RES 32XR3 FIO supports a single 15 pin three 5 pin rows female VGA graphics display port connector on the front I O panel see Figure A 3 for a connec tor pinout Pinout signal descriptions are listed in Table A 4 Symbol VGA Display Port 10 6 15 11 Figure A 3 RES 32XR3 FIO VGA Connector Pinout Table A 4 RES 32XR3 FIO VGA Connector Pin Signals Pin VGA Signal Description Pin VGA Signal Description 1 RED OUT Red signal output 9 NC Key no pin 2 GREEN OUT Green signal output 10 GND Ground VSync 3 BLUE OUT Blue signal output 11 MSO Monitor ID bit 0 MS1 SDA 4 MS2 Monitor ID bit 2 12 DDC Data Monitor ID bit 1 5 GND Ground HSync 13 HSYNC Horizontal synchronization 6 GND Red return 14 VSYNC Vertical synchronization MS3 SCL 7 GND Green return 15 DDC CLK Monitor ID bit 3 8 GND Blue return A 3 Themis Computer RES 32XR3 FIO Installation Manual A 5 Gigabit Ethernet LAN Ports The RES 3
54. ased on the functionality and capability of the following Intel chipset e Intel 5520 Tylersburg chipset e ICHIOR 2x IOH 36D Southbridge An overview of RES 32XR3 FIO design and specifications is given in Chapter 1 Overview and Specifications of this manual xxii Themis Computer Preface J Website Information This manual is intended for an experienced system administrator with a knowledge of both networking and high speed server systems Website Information Themis Computer corporate and product information may be accessed on the World Wide Web by browsing the website http www themis com Your Comments are Welcome We are interested in improving our documentation and welcome your comments and suggestions You can email your comments to us at docfeedback themis com Please include the document part number in the subject line of your email Notes Cautions Warnings and Sidebars The following icons and formatted text are included in this document for the reasons described Note A note provides additional information concerning the procedure or action being described xxiii Themis Computer RES 32XR3 FIO Installation Manual the eguipment This may involve but is not restricted to heavy eguipment or sharp objects To reduce the risk follow the instructions accompanying this sym bol t Caution A caution describes a procedure or action that may result in damage to
55. board and vise versa The settings are Disabled Enabled and Auto 3 3 5 IDE Floppy Configuration When this submenu is selected the AMI BIOS automatically detects the presence of the IDE devices and displays the following items 3 13 Themis Computer RES 32XR3 FIO Installation Manual 3 3 5 1 3 3 5 2 3 3 5 3 3 3 5 4 Floppy A This feature allows the user to select the type of floppy drive connected to the system as specified The options are Disabled 360KB 5 1 4 1 2MB 5 1 4 720KB 3 1 2 1 44MB 3 1 2 and 2 88MB 3 1 2 The default setting for Floppy A is 1 44MB 3 1 2 and for Floppy B is Disabled SATA 1 Configuration If Compatible is selected it sets SATA 1 to legacy compatibility mode while selecting Enhanced sets SATA 1 to native SATA mode The options are Disabled Compatible and Enhanced Configure SATA 1 This feature allows the user to select the drive type for SATA 1 The options are IDE RAID and AHCI When the option RAID is selected the item ICH RAID Code Base will appear ICH RAID Code Base This feature is available when the op tion RAID is selected Select Intel to enable Intel s SATA RAID firmware to configure Intel s SATA RAID settings Select Adaptec to enable Adaptec s SATA RAID firmware to configure Adaptec s SATA RAID settings The options are Intel and Adaptec SATA 2 Configuration This feature is available when the op tion IDE is selected for SATA 1 Selecti
56. ceass EES 3 6 3 3 1 8 Watch Dog Function e tisdsactiesg des idandid aal java 3 6 3 3 1 9 Restore on AC Power BE 3 6 Da AO Terr L9 EE 3 6 3 3 2 Processor and Clock Options iciis sisi esscdatisoseseatesache hagas aadeacdatinstan 3 7 3 3 EK e ER EE 3 7 3 3 2 2 Ratio CMOS Setting Available when the item CPU Ratio is set to Manual 3 7 3 3 2 3 Clock Spread Spectr gaiss sisaciscscsdeviecccestasseines asian svaledaava klaad 3 7 3 3 2 4 Hardware Prefetcher Available when supported by the CPU 3 7 3 3 2 5 Adjacent Cache Line Prefetch Available when supported by the CPU imeeme 3 7 3 3 2 6 Intel Virtualization Technology Available when supported by the CPU An 3 8 3 3 2 7 Execute Disable Bit Capability Available when supported by the OS and the CPU 3 8 3 3 2 8 Simultaneous Multi Threading Available when supported by the CPU An 3 8 3 3 2 9 Active Processor RE 3 8 3 3 2 10 Intel EIST Technology isisicisiesches pets gieengge Z en ett eren ee kuta tens 3 8 3 3 2 LE CIE SUpport corr onient le ila cated e ilu Sakla da et dens 3 9 3 3212 Mtel C STATE Tethered ai 3 9 3 3 2 13 C State package limit setting Available when Intel C State Tech is enabled 3 9 3 3 2 14 C1 Auto Demotion ee eege 3 9 3 32 15 GS Auto Demo ON e eege 3 9 3 3 3 e ee 3 9 SE a ENK EE ERR E 3 9 3 3 4 Advanced Chipset TE 3 10 Doel QPL EAS Speed MER 3 10 ix Themis Computer
57. chitecture independent imple mentation that is compatible with both Windows 2003 and Windows 2008 Operating Systems Themis Computer Overview and Specifications 1 6 1 Power Supply Slow Blinking LED for Suspend State Indicator When the CPU goes into a suspend state the chassis power LED will start blinking to indicate that the CPU is in suspend mode When the user presses any key the CPU will wake up and the LED will automatically stop blinking and remain on Main Switch Override Mechanism When an ATX power supply is used the power button can function as a system sus pend button to make the system enter a SoftOff state The monitor will be suspended and the storage drive will spin down Pressing the power button again will cause the whole system to wake up During the SoftOff state the ATX power supply provides power to keep the reguired circuitry in the system alive In case the system mal functions and you want to turn off the power just press and hold the power button for 4 seconds This option can be set in the Power section of the BIOS Setup routine 1 7 Power Supply As with all computer products a stable power source is necessary for proper and reliable operation It is even more important for processors that have high CPU clock rates The RES 32XR3 FIO motherboard can accommodate 24 pin ATX power supplies Although most power supplies generally meet the specifications reguired by the CPU some are
58. choose the storage drive s on which you want Red Hat Enter Themis Computer C Red Hat Enterprise Linux 5 Installation Installation prise Linux to be installed If you have two or more drives you can choose which drive s should contain this installation Unselected drives and any data on them are not touched To review and make any necessary changes to the partitions created by automatic partitioning select the Review option After selecting Review and clicking Next to move forward the partitions created for you appear in Disk Druid You can make modifications to these partitions if they do not meet your needs see Figure C 8 on page C 6 Click Next once you have made your selections to proceed C 2 9 Step 9 RED HAT ENTERPRISE LINUX 5 Drive dev sda 10237 MB Model VMware VMware Virtual S5 fas 110134 MB New Eat Deiere Reset RAID LVM Mount Points Size e d a a Device RAID Volume Type Format MB Start End Vv LVM Volume Groups Y VolGroup0o 10080 Logvo101 swap 1984 LogVo100 extn 8096 7 Hami Drives Hide RAID device LVM Volume Group members _ Retease Notes Back S Next Figure C 9 Creating a Custom Layout Step 9 If you chose one of the automatic partitioning options and selected Review you can either accept the current partition settings click Next or modify the setup using Disk Druid the manual partitioning tool If you chose to create a custom layout you must tell
59. controller for two extra ports z F IPMI blank No IPMI xxi Themis Computer RES 32XR3 FIO Installation Manual Table 3 RES x2XR3 FIO 16 Chassis Manual Matrix AC and DC Power Supplies CPU Mother soc RES 32XR3 FIO Manual P N RES 22XR3 FIO Manual P N board kets X8DAH F 2 117611 024 X8DTU F 2 117664 024 Naming Key X8uvwxyz e System RES x2XR3S and RES x1XR3 where Xx 3 2 0r1 RES 32XR3 FIO motherboard X8DAH F supports both audio and video however the naming key does not contain a T in the title u D Double CPU sockets S Single CPU socket v A Sound chip no graphics chip T Graphics chip no sound chip w Notapplicable SATA only SAS 1 0 SAS 2 0 y LN4 Extra gigabit Ethernet controller for two extra ports z F IPMI blank No IPMI i 3 6 The 3RU high 5 25 RES 32XR3 FIO has been designed to fit into a standard 19 rack and is provided with rack mount brackets with handles Optional rack mount slides are also available The RES 32XR3 FIO is rugged enough to withstand extreme shock up to 35G temperature and EMI as that associated with such demanding markets as the military aerospace and telecommunications industries The two guad core dual core Intel Xeon CPUs operate up to 6 4 GT s with a 1333 MHz front side system bus and support up to 192 GigaBytes of DDR3 ECC FB DIMM memory modules The RES 32XR3 FIO is b
60. d to the appropriate section to install or replace a memory module page 2 3 PCI card page 2 7 or lithium battery page 2 8 2 2 Themis Computer Installation and Operation Installation Procedures 2 1 2 Memory Modules The RES 32XR3 FIO supports memory according to Table 2 1 Table 2 1 RES 32XR3 FIO Memory Capacity Memory Parameters Motherboard DDR3 A A i Number Pins per Capacity Registered Speed MHz of DIMMS DIMM ECC X8DAH F 144 GB Yes 1333 1066 800 18 240 Caution Exercise extreme caution when installing or removing FBD Memory Modules to prevent any possible damage Table 2 2 RES 32XR3 FIO Optimal Memory Population Two CPUs Installed DIMMs CPU 1 To populate P1 DIMMs CPU 2 to populate P2 DIMMs Branch 0 Branch 1 Branch 2 Branch 0 Branch 1 Branch 2 6 DIMMs 1A 1B 1C 1A 1B 1C 12DIMMs 1A 2A 1B 2B 1c 2c 1A 2A B Jicfec 18 DIMMs 1A 2A 3A 1B 2B 3B 1C 2C 3C 1A 2A 3A 1B 2B 3B 1C 2C 3C When installing memory follow these rules for best memory performance e It is strongly recommended that you do not mix memory modules of different speeds and sizes If DIMMs of different speeds have been installed verify that the BIOS setup is configured for the fastest speed of RAM used Themis Computer RES 32XR3 FIO Installation Manual 2 1 2 1
61. e ordered at the time of purchase To learn how to install rack mount slides refer to Appendix B Rack Mount Slide Installation Table 1 8 Approximate Weights of the RES Series Weight CPU EE Model Approximate Sockets Depth Description RES 12XR3 19 5 Ibs 8 9 kg 2 20 Includes e All CPU sockets filled e 6 DIMMs RES 12XR3 S 17 lbs 7 7 kg 2 17 e 2 storage drives e 2 PCI cards e 1 CD RW DVD ROM drive RES 11XR3 16 5 Ibs 7 5 kg 1 17 e 2 power supplies RES 22XR3 25 Ibs 11 4 kg 2 20 Includes s e All CPU sockets filled RES 22XR3 S 23 Ibs 10 4kg 2 17 e 6 DIMMs e 2 storage drives e 2 PCI cards RES 22XR3 FIO 25 3 lbs 11 5kg 2 16 e 1 CD RW DVD ROM drive e 2 power supplies RES 21XR3 22 5 lbs 10 2 kg 1 17 RES 32XR3 28 5 Ibs 12 9 kg 2 20 Includes i e All CPU sockets filled RES 32XR3 S 26 5 Ibs 12 kg 2 17 e 6 DIMMs e 2 storage drives e 2 PCI cards RES 32XR3 FIO 29 Ibs 13 2 kg 2 16 e 1 CD RW DVD ROM drive e 2 power supplies RES 31XR3 26 Ibs 11 8 kg 1 17 1 19 Themis Computer RES 32XR3 FIO Installation Manual 1 20 Themis Computer Installation Section Chapter Installation and Operation This chapter describes e How to install a memory module storage drive PCI card 120 mm fan power supply and lithium battery e Rack mount brackets and slides How to turn the RES 32XR3 FIO
62. e 5 to 95 non condensing Maximum Wet Bulb Operating Non Operating e 55 C non condensing e 70 C non condensing Altitude Operating Non Operating e 0 to 10 000 feet above sea level e 0 to 40 000 feet above sea level a Specifications are dependent upon the configuration in this manual Themis Computer RES 32XR3 FIO Installation Manual 1 10 2 Electrical Table 1 7 lists the electrical specifications for the RES 32XR3 FIO Table 1 7 RES 32XR3 FIO Electrical Specifications Description Parameter AC 120 volts 750W DC 48 volts 750W DC 28 volts 500W Input Power typical e 420 watts typical e 420 watts typical e 450 watts typical Input Current e 3 5 amperes 0120 Vac e 13 5 amperes 48 Vdc e 16 amperes 028 Vdc Input Freguency e 47 63 Hertz NA NA Input Voltage e 100 265 Vac internally fused e 40 72 Vdc internally fused e 18 36 Vdc internally fused Input VA Rating e 425 VA NA NA BTU Rating e 1447 BTU hour e 1447 BTU hour e 1447 BTU hour Power Factor e 0 99 NA NA Input Leakage Cur e 35mA NA NA rent e Y Type Plug Type e IEC pe SVS5 4 or eguiva SVS5 4 or eguivalent lent 1 16 a Does not include plug in PCI cards b NA Not Applicable 1 10 2 1 System Power The RES 32XR3 FIO operates with two N 1 redundant AC power supplies of
63. e 5520 platform also offers a wide range of RAS Reliability Availability and Serviceability features These features include memory interface ECC x4 x8 Single Device Data Correction SDDC Cyclic Redundancy Check CRC parity protection out of band register access via SMBus memory mirroring memory sparing and Hot plug support on the PCI Express Interface Features of the 5500 5600 Processor and the 5520 Chipset e Four processor cores in each processor with 8MB shared cache among cores e Two full width Intel QuickPath interconnect links up to 6 4 GT s of data transfer rate in each direction e Virtualization Technology Integrated Management Engine supported e Point to point cache coherent interconnect Fast narrow unidirectional links and Concurrent bi directional traffic e Error detection via CRC and Error correction via Link level retry Themis Computer Overview and Specifications Special Features 1 4 1 4 1 Special Features Recovery from AC Power Loss BIOS provides a setting for you to determine how the system will respond when AC power is lost and then restored to the system You can choose for the system to remain powered off in which case you must press the power switch to turn it back on or for it to automatically return to a power on state See the Advanced BIOS Setup section to change this setting The default setting is Last State 1 5 1 5 1 1 5 2 PC Health Monitoring This
64. e Development Web server You can further customize the software selection now or after install via the software management application Customize jater 2 Customize now D Release Notes Back P Next Figure C 16 Package Installation Default Screen Step 16 Now that you have made most of the choices for your installation you are ready to confirm the default package selection or customize packages for your sys tem The Package Installation Defaults screen appears and details the default package set for your Red Hat Enterprise Linux installation This screen varies depending on the version of Red Hat Enterprise Linux you are installing see Figure C 16 on page C 14 To customize your package set further select the Customize now option on the screen Clicking Next takes you to the Package Group Selection screen Themis Computer C Red Hat Enterprise Linux 5 Installation Installation C 2 17 Step 17 RED HAT ENTERPRISE LINUX 5 7 GNOME Desktop Environment Applications Ki KDE K Desktop Environment Development Servers Base System Languages GNOME is a powerful graphical user interface which includes a panel desktop system Icons and a graphical file manager 32 of 36 optional packages selected Optional packages Dretease Notes Back Next Figure C 17 Optional Packages Step 17 You can select package groups which group components together accord ing to functio
65. e EE EE 3 23 3 200 3 PS2 KB MS W ake EE 3 23 3 3 10 4 ACPI Aware O S sjcieisiasad dared ctiassibctieshea es kehadu maaalad alale 3 24 3 3 10 5 Susperid Mode 2 205sicca ce scecasssessacevacedendascebenes sasadeescesead tas na 3 24 2 3 N0 6 ANC PE APIC Suppor E 3 24 3 3 40 7 APIC ACPI SC HEN eege lessons saan 3 24 3 3 LOS Headless Mode E 3 24 33 1090 ACP Version Features saksamaa s 3 24 33 11 KE E E EE 3 24 3 3 11 1 TCG TPM Trusted Platform Module Support 0 0 0 3 24 3 312 PMI Omi our io asuks ukaas ak 3 25 3 3 12 1 IPMI Firmware Revision EE 3 25 33 122 Status EE 3 26 3 3 13 View BMC System Event BEE 3 26 3 3 13 1 Clear BMC System Event Log gesiess deser eeneg 3 26 3 3 14 Set LAN Configuration ssseeseeeeseseeesseesseessereseseesstessresserssereseseesseessessee 3 26 3 3 14 1 Channel Number sisscccsssiccdeteedaads tostecaessdeeas ctausededessseaderansdantaveseas 3 27 3 3 14 2 Channel Number Status E 3 27 3 3 15 IP Address E 3 27 3 3 10 EE E 3 27 3 31 SET PEF e WE 3 28 SN ER EE GET 3 28 3 3 17 2 BMC Watch Dog Timer Action cceeecceesseceeteceenteeeeneeeeenes 3 28 xi Themis Computer RES 32XR3 FIO Installation Manual 3 3 18 Event Log Configuration EE 3 29 SSSA View Eyent LOE tbe dee E va 3 29 3 3 18 2 Mark all events as read 4tsuulnisitesilssemikuls da leiad tk 3 29 e Clearevent eegen 3 29 3 3 18 4 PCI Error Log iesciavsnceistecieaiiads ee erena oai a e a aE S as 3 29 3 8 EEN eege 3 30
66. ed from the power source only when the power cord is disconnected from the power source Therefore the power cord and its connectors must always remain easily accessible e Do not set up the device in the proximity of heat sources or in a damp location Make sure the device has adequate ventilation e All connection cables must be screwed or locked to the chassis housing e The device is designed to be used in horizontal position only e The device is no longer safe to operate when the device has visible damage or the device no longer functions e In these cases the device must be shut down and secured against unintentional operation e Repairs may only be carried out by a person authorized by Themis Computer e The device may only be opened for the installation and removal of extension PCI cards memory modules storage drives fan housings power supplies Themis Computer RES 32XR3 FIO Installation Manual and the lithium battery all in accordance with the instructions given in this manual e If extensions are made to the device the legal stipulations and the device spec ifications must be observed e The device must be switched off when removing the top cover for example before installing extension PCI cards Operation of Laser Source Devices DVD CD ROM drives contain laser light emitting diodes classified in accordance with IEC 825 1 1993 LASER CLASS 1 and therefore must not be opened If
67. ed shipping paperwork is one pound 0 5 kg Therefore both the shipping container and a fully installed RES 32XR3 FIO includ ing power cords manual and associated paperwork weigh under 37 pounds 16 5 kg Caution Do not discard the original packaging in which your system was shipped The original packaging was designed specifically to withstand the stress and rigors of today s shipping environment It will be needed in the event the system must be shipped back to Themis Computer For re packing instructions see Re Packing Instructions on page E 1 1 11 1 Accessory Kit Each RES 32XR3 FIO is packaged with an Accessory Kit consisting of the follow ing items A A Power cord Retainer Bracket B Two AC Power Cords C Two Storage Drive Barrel Keys When you unpack the RES 32XR3 FIO please verify that all of these items are included If any of these items are missing or not as pictured please call Themis Technical Support at 510 252 0870 or send an email to support themis com To learn how to secure the AC power cords and the power cord retainer bracket refer to Section 2 3 1 Plugging in the AC Power Cords on page 2 15 Themis Computer Overview and Specifications Packaging and Shipping 1 11 2 Rack Mount Slides Optional Rack Mount Slides can be mounted on each side of the RES 32XR3 FIO for the pur pose of sliding the unit in and out of a rack Mounting slides are optional and can b
68. et for later use see A in Figure 2 11 2 Put the right index finger on the power supply extraction handle and the right thumb on the bottom side of the power supply locking lever 3 Squeeze the locking lever toward the pull handle and firmly pull the power supply from the chassis Themis Computer Installation and Operation Installation Procedures Power supply locking bracket E i illl 1 Knurled captive Phillips screw J A A Remove power supply locking bracket j Push up t release power supply Phillips Screw Hole for knurled captive screw on power supply locking bracket Power Supply Locking Lever B then disengage locking lever and remove power supply Extraction Handle Power LED AC Receptacle Figure 2 11 The RES 32XR3 FIO Power Supply Locking Mechanism Caution When pulling the power supply from the chassis hold it at the bot tom to prevent it from falling and damaging the unit 2 1 7 2 Installing a Power Supply 2 13 Themis Computer RES 32XR3 FIO Installation Manual Perform the following steps to install a power supply 1 Insert the replacement power supply into an empty slot with the extraction handle horizontal see Figure 2 11 on page 2 13 2 Push the power supply carefully into its slot until it is firmly seated a click will be heard when the locking lever is securely fastened to the chassis 3 Replace the power supply locking bracket and tighten
69. gracefully shut down the system through the BIOS pressing the switch OFF for 4 seconds or more results in a hard power off equivalent to pulling the plug on the system Remote Only Configuration When the Remote On Off Switch module is configured as an ON only device if the RES 32XR3 FIO is turned OFF pressing the remote switch ON will turn the system on Turning the RES system off however requires pressing the ON OFF button that is located directly on the front of the RES 32XR3 FIO chassis Ordering the Remote On Off Switch Because internal modifications must be made to the RES 32XR3 FIO in order to support the Remote On Off Switch module the module must be ordered and installed at the time your system is ordered Themis Computer E 1 E 2 Appendix Re Packing Instructions Re Packaging for Shipment If it becomes necessary to return eguipment to Themis Computer it is very impor tant that the eguipment be shipped in packaging that provides adeguate protection against crushing and moisture invasion The original packaging is best for this pur pose provided the packaging is retained in serviceable condition If the original packaging is no longer serviceable or no longer available care should be taken in repackaging for shipment so that the equipment is protected from damage in transit Equipment should be wrapped in a moisture resistant covering and placed either in double boxes or in boxes with crush resi
70. he left frame it is highlighted in white Often a text message will accompany it 3 1 Themis Computer RES 32XR3 FIO Installation Manual Note The AMI BIOS has default text messages built in Themis retains the op tion to include omit or change any of these text messages The AMI BIOS Setup Utility uses a key based navigation system called hot keys Most of the AMI BIOS setup utility hot keys can be used at any time during the setup navigation process These keys include lt F1 gt lt F10 gt lt Enter gt lt ESC gt arrow keys etc J Note Options printed in Bold are default settings 3 1 2 How To Change the Configuration Data The configuration data that determines the system parameters may be changed by entering the AMI BIOS Setup utility This Setup utility can be accessed by pressing lt Del gt at the appropriate time during system boot 3 1 3 Starting the Setup Utility Normally the only visible Power On Self Test POST routine is the memory test As the memory is being tested press the lt Delete gt key to enter the main menu of the AMI BIOS Setup Utility From the main menu you can access the other setup screens An AMI BIOS identification string is displayed at the left bottom corner of the screen below the copyright message Flashing the wrong BIOS can cause irreparable damage to the system In no event shall Themis be liable for direct indirect special incidental or consequential da
71. he type of CPU used in the motherboard e Speed This item displays the speed of the CPU detected by the BIOS e Physical Count This item displays the number of processors installed in your system as detected by the BIOS e Logical Count This item displays the number of CPU Cores installed in your system as detected by the BIOS 3 2 4 System Memory This displays the size of memory available in the system e Populated Size This item displays the installed memory size detected by the BIOS e Available Size This item displays the available memory detected by the BIOS 3 4 Themis Computer BIOS Setup Utility Advanced Setup Configurations 3 3 Advanced Setup Configurations Use the arrow keys to select Advanced Setup and hit lt Enter gt to access the submenu items BIOS SETUP UTILITY gt Boot Feature Figure 3 2 Advanced Settings 3 3 1 Boot Features 3 3 1 1 Quick Boot If Enabled this option will skip certain tests during POST to reduce the time needed for system boot The options are Enabled and Disabled 3 3 1 2 Quiet Boot This option allows the bootup screen options to be modified between POST mes sages or the OEM logo Select Disabled to display the POST messages Select Enabled to display the OEM logo instead of the normal POST messages The options are Enabled and Disabled Themis Computer RES 32XR3 FIO Installation Manual 3 6 3 3 1 3 3 3 1 4 3 3 1 5 3 3 1 6 3 3
72. hich a card will be installed see Figure 2 5 Captive knurled screw PCI card I O panels 7 total and lift the PCI slot covers clear Loosen the captive knurled screw Figure 2 6 PCI Card Clamp Themis Computer RES 32XR3 FIO Installation Manual 2 Loosen the captive knurled screw on the chosen PCI slot covers and remove the slot covers see Figure 2 6 3 Install the new card making sure the I O panel is aligned with the chassis opening 4 Repeat Step 1 and Step 3 until all additional cards have been installed 5 Attach any internal I O cables to the installed PCI cards and carefully fold and tuck any exposed ribbon cables into the cabinet 6 If you have no further installations to perform close the RES 32XR3 FIO chassis by refastening the top cover removed in Section 2 1 1 Remove Pro tective Top Cover on page 2 1 2 1 4 Lithium Battery 2 1 4 1 Removing the Lithium Battery Perform the following steps to remove the lithium battery 1 Make sure the system is powered off see Operation on page 2 15 2 Locate the lithium battery socket and squeeze the latch see A Figure 2 7 together until the battery lifts out of its socket Battery Latch d FN j G E A A To release squeeze battery latch together B and remove battery from socket Figure 2 7 The RES 32XR3 FIO Lithium Battery and Socket 3 Remove the old battery and replace with a new battery see next section 2
73. hics core It supports USB 2 0 and 1 1 for remote keyboard mouse vir tual media emulation It also provides LPC interface to control Super IO functions The WPCM450 is connected to the network via an external Ethernet PHY module The WPCM450 communicates with onboard components via six SMBus interfaces fan control and Platform Environment Control Interface PECI buses Themis Computer Overview and Specifications Specifications 1 10 1 10 1 Specifications General Table 1 6 lists general specifications for the RES 32XR3 FIO Table 1 6 RES 32XR3 FIO General Specifications Parameter Description Dimensions e 5 25 3RU high e 17 07 43 4 cm wide 19 rack mountable e 16 40 6 cm deep including clearance for the rear thumb screws Weight e Under 27 pounds 12 3 kg includes 2 full length up to 19 Rack Mountable with Slide capability Temperature Operating Non Operating 12 25 PCI cards 1 CD RW DVD ROM drive 2 SATA stor age drives and 2 power supplies e Add 8 8 pounds 4 kg for the shipping container and two AC power cords e The manual and associated shipping paperwork weighs ap proximately 1 Ib 0 5 kg e Left and right rack mount tabs attached to chassis e Left and right rack mount slides are optional e 0 up to 65 C 32 up to 149 F e 40 to 70 C 40 to 158 F Relative Humidity Operating Non Operating e 8 to 95 non condensing
74. ien RAE e a E a a ei E 1 E 3 Instructions for Re Packing secisssicecssecedasasussades vedcndssgesaaesdesdaedass soasanasedantanuseaaenarbece E 2 Index beet Roe a ein EAA eee ES esaa Index 1 Reader Comment Card xiv Themis Computer Table of Contents List of Figures Figure 1 Rugged Enterprise Server Model RES 32XR3 FIO A XiX Figure1 4 RES 32XR3 FIO EE 1 1 Figure 1 2 XSDAH F Motherboard Block Dagram eeeeeeseeeeeeeceeeeeeeteeeeeneeeees 1 3 Figure 1 3 External Features of RES 32XR3 FIO Front 1 4 Figure 1 4 Major Components of RES 32XR3 FIO Open Top Niew 1 6 Figure 1 5 RES 32XR3 FIO System LEDs and I O Connectors 0 eee eeeeeeeteeeeeees 1 7 Figure 2 1 Remove the RES 32XR3 FIO Protective Access Cover 2 2 Figure 2 2 Remove the Air Flow Deflector bcrews ec ceecceeeeececeeeceeeeeeceeeeeceneeecneeeesaes 2 4 Figure 2 3 Memory Module Slot Locations wwirereeenreraraee 2 5 Figure 2 4 Memory Module Removal enne 2 6 Figure 2 5 PCI Card Installation sstvodesatunv s vete suhetena Eege ENEE 2 7 uneegnen 2 7 Figure 2 7 The RES 32XR3 FIO Lithium Battery and Socket eee eeseeeeeeeeeeeeees 2 8 Figure 2 8 Unlocking the RES 32XR3 FIO Storage Drives Front Doors Removed 2 9 Figure 2 9 RES 32XR3 FIO Storage Drive Removal 2 10 Figure 2 10 The RES 32XR3 FIO 120 mm Fans 20 0 0 cee eeececeseeeceeececeeeceeseeeesteeeeneeeees 2 11 Figure 2 11 The RES 32XR3 FIO Power Supply Locking Mechanism
75. l components can be seen in the open top view cover removed of Figure 1 4 on page 1 6 Themis Computer Overview and Specifications System LEDs and I O Connectors Table 1 3 Specifications of the RES 32XR3 FlO Feature Details Operating temperature e 0 up to 65 C 32 up to 149 F Shock endurance e 35G 25 msec duration 3 axis Dimensions e 5 25 3RU high 17 07 43 4 cm wide 19 48 3 cm with mounting brack ets 16 40 6 cm deep including clearance for the rear thumb screws Rack mount brackets and e Left and right rack mount tabs are attached to the chassis slides e Left and right rack mount slides are optional e 750 watts each auto ranging 100 240 VAC e Load sharing N 1 redundant hot pluggable e Optional 750 Watts DC power supply 48V and 28V Dual power supplies a Specifications are dependent on the configurations specified in this manual 1 2 System LEDs and I O Connectors All RES 32XR3 FIO system LEDs and all I O connectors are located on the front panel see A Figure 1 5 page 1 7 LEDs are described in Table 1 4 on page 1 8 I O connectors are described in Table 1 5 page 1 9 1 5 Themis Computer RES 32XR3 FIO Installation Manual 12 DIMM Memory Modules and 2 CPUs underneath 4 I O Slots 1 to 7 A o Front Power Supply 1 of 2 PCI Slot 1 PCI Express 2 0 x8 i 4 i S d 2 PCI Express 2 0 x16 4 i C AA
76. lation procedures 2 installing rack mount slides B memory modules 2 4 PCI cards 2 7 Instructions for Re Packing E 2 Intel 5520 Tylersburg chipset xxii Intel chipset xxii Intel Xeon CPU xix Intel Xeon CPU 1366 pin K keys front bezel 7 18 Index 1 Themis Computer RES 32XR3 FIO Installation Manual L LAN port A 4 latch locks 7 4 LEDs 1 5 NIC Gb Ethernet 8 SATA storage drives SD 1 8 system 1 4 Linux Installation 2 6 lithium battery 2 installation 2 9 lithium battery and socket illustration of 2 8 removal 2 8 M Main BIOS Setup Screen 3 5 Major Components of the RES 32XR3 FIO Open Top View 6 Major Features Table 2 Chipset 2 Expansion Slots 2 Front I O 1 2 Memory 1 2 Processors 2 Storage Drive Options 2 N Notes xxiii O Operating temperature 5 Optional Remote On Off Switch D 1 Output Voltage 1 17 Overheat LED 8 P Packaging and Shipping 1 18 Packing Components E PCI cards 2 1 2 7 pinouts Gigabit Ethernet LAN A 4 serial ports A 2 Index 2 USB port A 2 Plugging in and Securing the AC Power Cords 2 15 power button 4 button and LED 2 16 cord sockets 4 LED 2 17 power cords 2 16 power supply 1 5 2 1 2 16 installation 2 13 locking mechanism 2 3 power cord retainer bracket 7 18 protective cover chassis 2 PS 2 keyboard A PS 2 mouse A R rack mount brackets 2 74 with handles 2 14 without handles 2 4 rack mount slides xxii
77. lease be sure to provide adequate airflow to your system 1 5 4 CPU Fan Auto Off in Sleep Mode The CPU fan becomes active when the power is turned on It continues to operate when the system enters the Standby mode When in the sleep mode the CPU will not run at full power thereby generating less heat System Resource Alert This feature is available when used with Supero Doctor II in the Windows OS envi ronment or used with the Supero Doctor II in Linux Supero Doctor is used to notify the user of certain system events For example you can also configure Supero Doc tor to provide you with warnings when the system temperature CPU temperatures voltages and fan speeds go beyond a pre defined range 1 6 ACPI Features ACPI stands for Advanced Configuration and Power Interface The ACPI specifica tion defines a flexible and abstract hardware interface that provides a standard way to integrate power management features throughout a PC system including its hard ware operating system and application software This enables the system to auto matically turn on and off peripherals such as CD ROMs network cards storage drives and printers In addition to enabling operating system directed power management ACPI pro vides a generic system event mechanism for Plug and Play and an operating system independent interface for configuration control ACPI leverages the Plug and Play BIOS data structures while providing a processor ar
78. ler BMC manages the interface between system management software and platform hardware This is an informational feature which returns the status code of the BMC micro controller View BMC System Event Log This feature displays the BMC System Event Log SEL It shows the total number of entries of BMC System Events To view an event select an Entry Number and press lt Enter gt to display the information as shown in the screen Total Number of Entries e SEL Entry Number e SEL Record ID e SEL Record Type Timestamp Generator ID e Event Message Format User e Event Sensor Type e Event Sensor Number e Event Dir Type e Event Data 3 3 13 1 Clear BMC System Event Log Select OK and press the lt Enter gt key to clear the BMC system log Select Cancel to keep the BMC System log The options are OK and Cancel A Caution Any cleared information is unrecoverable Make absolutely sure that you no longer need any data stored in the log before clearing the BMC Event Log 3 3 14 Set LAN Configuration Set this feature to configure the IPMI LAN adapter with a network address as shown in the following graphics Themis Computer BIOS Setup Utility Advanced Setup Configurations 3 3 14 1 Channel Number Enter the channel number for the SET LAN Config command This is initially set to 01 Press or on your keyboard to change the Channel Number 3 3 14 2 Channel Number Status 3 3 15
79. low Blinking LED for Suspend State Indicator m 1 13 1 6 2 Main Switch Override Mechanisme 1 13 17 POWSESUPPIN EE 1 13 1 Super NEE 1 14 1 9 Overview of the Winbond WPCM450 Controller rnrrnmr 1 14 ST enee 1 15 119 11 SE WEEN 1 15 1102 Elecmieal NEE 1 16 LAO A System Power since cea denies cen Gea ieee 1 16 1 10 22 e e 1 17 110 3 Environmental lk ee E 1 17 EN Le SHOCK aaastal maatasa masti aaa aulas 1 17 1 10 3 2 Ge e ER e 1 17 t11 E E ter 1 18 US RES Accessory IRA EE 1 18 1 11 2 Rack Mount Slides Optional enne 1 19 2 Installation and Operation 0 cccccccecccesscecssececssececsececeececeececseeeeseeeeseeeesaeeess 2 1 vii Themis Computer RES 32XR3 FIO Installation Manual SIN E ee EE 2 1 2 1 1 Remove Protective Top EE 2 1 e ene Te EE 2 3 slk Installati n ESMALT AS 2 4 24130 PELE EE 2 7 2 1 3 11 Umstalime AG ALCS kasakatest aa 2 7 SNE SEENEN EE 2 8 2 1 4 1 Removing the Lithium Battery miteetteree 2 8 2 1 4 2 Installing a Lithium Battery teuer dereen ee dee 2 9 ER D SALVA ER 2 9 2 1 5 1 Storage Drive EE 2 9 2 1 5 2 Storage Drive Installation EE 2 10 2 1 6 Removable 120 mm Fan v ssa alamaadli 2 11 2 1 6 1 Removing and Installing a 120 mm kan 2 11 211 ee EE 2 12 2 1 7 1 Removing a Power Supply kiesiessvsvdktvesaase kasakate 2 12 2 1 7 2 Installing a Power Supply ssesssessesssessssssssssesseesseeeseeesseeesseesseesse 2 13
80. ls before inserting and removing connectors or test equipment 6 Keep the work area free of non conductive materials such as ordinary plastic as sembly aids and Styrofoam 7 Use field service tools such as cutters screwdrivers and vacuums that are con ductive 8 Always place drives and boards PCB assembly side down on the foam Instructions for the Lithium Battery Systems are equipped with a lithium battery installed on the motherboard To replace this battery please observe the instructions that are described in this man ual Warning There is a danger of explosion when the wrong type of battery is used as a replacement vi Themis Computer Table of Contents Table of Contents Preface a a aehaaten Momentos XiX 1 Overview and Specifications miiimeveneeeneneneneneenenanenennnenenneeenneeeenneee enne 1 1 TA AINENA EE 1 1 1 2 System LEDs and I O CEC Eeer 1 5 1 3 Chipset RT 1 10 1 3 1 Features of the 5500 5600 Processor and the 5520 Chipset 1 10 TAR Special GE 1 11 1 4 1 Recovery from AC Power LOSS ENEE 1 11 L PE Health Monitoring muisinirs ihas E nonin ee Edel 1 11 1 5 1 Fan Status Monitor with Firmware Control ccccccessseceeeesseeeeeeeenes 1 11 1 5 2 Environmental Temperature Control ccc eeeccecesceecesececeeeeeenteeeeneeesaes 1 11 1 5 3 CPU Fan Auto Off in Sleep Mode aen 1 12 1 34 System Resource EE 1 12 DAC RE 1 12 1 6 1 S
81. ly compress the layers around the equip ment and allow for the box flaps to be closed e Seal the top of the box with strong packing tape wrapping the tape completely around the box both lengthwise and crosswise e Prepare for shipment in accordance with the instructions received from Themis Computer Figure E 2 Order of Assembly E 3 Themis Computer RES 32XR3 FIO Installation Manual E 4 Themis Computer Numerics 120 mm fan housing 2 19 rack xxii 3RU form factor 1 2 5520 chipset 7 10 A AC on off switch 2 16 power cord 18 2 15 2 16 power LED 2 17 power socket 2 15 power supply 1 4 accessory kit 8 antistatic bags 2 1 antistatic wrist strap 2 applications military aerospace 1 1 telecommunications C Cautions xxiii COM1 COM2 serial port header 1 9 Comments xxiii components major 1 4 Configuration system 2 16 CPU 2 1 D Dimensions chassis 5 E Electrical Specifications 1 16 Electrostatic Discharge 1 17 EMI xxii Environmental Specifications 1 17 ESD Index grounding techniques 2 7 protected mat 2 7 Ethernet A 4 F flanges 2 14 form factor 3RU 1 2 front panel 4 fused AC 1 16 G General Specifications 7 15 Getting Started 2 6 Gigabit Ethernet A 4 I I O Connectors Ethernet LAN Port 1 9 PS 2 keyboard 1 9 PS 2 mouse 1 9 Serial Ports 7 9 USB Serial Ports 9 VO connectors 1 5 I O faceplates 1 4 ICHIOR IOH 36D xxii Instal
82. m ages arising from a BIOS update If you have to update the BIOS do not shut down or reset the system while the BIOS is updating This is to avoid possible boot fail ure 1 Caution Do not upgrade the BIOS unless your system has a BIOS related issue 3 2 Themis Computer BIOS Setup Utility Main Setup 3 2 3 2 1 J Main Setup When you first enter the AMI BIOS Setup Utility you will enter the Main setup screen You can always return to the Main setup screen by selecting the Main tab on the top of the screen The Main BIOS Setup screen is shown below BIOS SETUP UTILITY System Tine Figure 3 1 Main BIOS Setup Screen System Time System Date Use this option to change the system time and date Highlight System Time or System Date using the arrow keys Key in new values through the keyboard and press lt Enter gt Press the lt Tab gt key to move between fields The date must be entered in Day MM DD YY format The time is entered in HH MM SS format Note The time is in the 24 hour format For example 5 30 P M appears as 17 30 00 Themis Computer RES 32XR3 FIO Installation Manual 3 2 2 Supermicro X8DAH e Version This item displays the BIOS revision used in your system e Build Date This item displays the date when this BIOS was completed 3 2 3 Processor The AMI BIOS will automatically display the status of the processor used in your system e CPU Type This item displays t
83. make sure to save all open files properly close applications and broadcast a warning to all users on any active networks 1 To turn the RES 32XR3 FIO power off press and hold the system power on off button see Figure 2 14 page 2 16 for at least four 4 seconds This will shut down the system and turn off the POWER LED As an alternative a modern operating system Windows 9x or newer and Linux for example can turn off the system after a graceful OS software shutdown Themis Computer RES 32XR3 FIO Installation Manual 2 18 Themis Computer Installation Section Chapter BIOS Setup Utility 3 1 3 1 1 Introduction This chapter describes the AMI BIOS Setup Utility for the RES 32XR3 FIO mother board Starting BIOS Setup Utility To enter the AMI BIOS Setup Utility screens press the lt Delete gt key while the sys tem is booting up Note In most cases the lt Delete gt key is used to invoke the AMI BIOSsetup screen There are a few cases when other keys are used such as lt F1 gt lt F2 gt etc Each main BIOS menu option is described in this manual The Main BIOS setup menu screen has two main frames The left frame displays all the options that can be configured Grayed out options cannot be configured Options in blue can be config ured by the user The right frame displays the key legend Above the key legend is an area reserved for a text message When an option is selected in t
84. n Step 3 Press Enter and you will see the Welcome screen The Welcome screen does not prompt you for any input From this screen you can access the Release Notes for Red Hat Enterprise Linux 5 0 0 by clicking on the Release Notes button see Figure C 3 on page C 3 Click the Next button to continue Step 4 DE Comoe vip ee egen ri seem k rnas tor the Engi usa Additional Language a 2 7 Support Select a language to use as the default language The detai tanguage will be the language used on the system once imstallaon rn comp ein H you fzg ret oton nereg lt hoore to matull other tomp Pewee de sl arnt Languages Mis possible tu Ep a onsen change tw default language r at rei weg ater the imstallavon pc gt U ray b stat Engh Saun Ster ar Red Mat Linux can install and support several languages To Deg Srepeteeg use more than one Language an E vtrcsss your system choose specifie F eese iV ame Kate languages te be instalked of select all Languages to have afi available Languages msitalled on the system Use the Reset button to cancel 7 1 Si sme amlee Segen 23 rete reng Caressa enen gt pi p Figure C 4 Language Selection Step 4 Using your mouse select a language to use for the installation The lan guage you select here will become the default language for the operating system once it is installed Selecting the appropriate language also helps target your time zone config
85. n for example X Window System and Editors individual packages or a combination of the two To select a component click on the checkbox beside it Select each component you wish to install Once a package group has been selected if optional components are available you can click on Optional packages to view which packages are installed by default and to add or remove optional packages from that group see Figure C 17 on page C 15 If there are no optional components this button will be disabled Click Next Themis Computer RES 32XR3 FIO Installation Manual C 2 18 C 2 19 Step 18 RED HAT ENTERPRISE LINUX 5 Click next to bagin installation of Red Hat Enterprise Unux Server A complete fog of the installation can be found in the file root install log after rebooting your system A kickstart file containing the installation options selected can be found in the file Iroot anaconda ks etg after rebooting the system Q Betease Notes C Back one Figure C 18 Option to Review or Continue Step 18 Once you have selected the package groups of your choice you get one last chance to go back before starting the installation process Click Next if you re happy with your choices or click Back to make changes see Figure C 18 on page C 16 Click Next Step 19 RED HAT ENTERPRISE LINUX 5 lt redhat Installing glib2 2 12 3 2 4c6 1386 2 MB A library of handy utility functions Q Betease
86. n pulling the old module directly up from the slot until it is free of the connector see Figure 2 4 on page 2 6 2 5 Themis Computer RES 32XR3 FIO Installation Manual Press latch downward 8 outward at each end Figure 2 4 Memory Module Removal 3 Before inserting a new memory module into the vacant slot make sure that the two latches are pulled outward away from the center of the slot With the latches in the outward position gently insert the new module verti cally into its slot and press firmly downward until it snaps into place Note Make sure the memory module has the proper orientation by align ing the alignment notch at the bottom edge with its counterpart ridge at the bottom of the slot 4 When finished replacing memory modules replace the air flow diverter and secure it with the seven screws previously removed 5 Replace the PCI card retainer bracket and secure it with the single captive screw loosened in Step 1 on page 2 4 2 6 Themis Computer Installation and Operation Installation Procedures 2 1 3 PCI Cards The RES 32XR3 FIO supports seven PCI Express slots see Figure 2 5 Slot 1 2 3 4 5 6 7 i vee A ies pe Let hn t ra EI R Slots 1 3 5 and 7 are PCI Express 2 0 x8 Slots 2 4 and 6 are PCI Express 2 0 x16 Figure 2 5 PCI Card Installation 2 1 3 1 Installing Cards Perform the following steps to install a PCI card 1 Locate the empty slot within w
87. nder a virtual environment The options are Disabled and Enabled Themis Computer BIOS Setup Utility Advanced Setup Configurations 3 3 4 12 NUMA Support Select Enabled to use the feature of Non Uniform Memory Access to improve CPU performance The options are Enabled and Disabled 3 3 4 13 Intel OAT The Intel I OAT V O Acceleration Technology significantly reduces CPU overhead by leveraging CPU architectural improvements freeing resources for other tasks The options are Disabled and Enabled 3 3 4 14 Active State Power Management Select Enabled to start Active State Power Management for signal transactions between LO and LI Links on the PCI Express Bus This maximizes power saving and transaction speed The options are Enabled and Disabled 3 3 4 15 Route Port 80h Cycles to This feature allows the user to decide which bus to send debug information to The options are LPC and PCI 3 3 4 16 USB Functions This feature allows the user to decide the number of onboard USB ports to be enabled The Options are Disabled 2 USB ports 4 USB ports 6 USB ports 8 USB ports 10 USB ports and 12 USB ports 3 3 4 17 USB 2 0 Controller Select Enabled to activate the onboard USB 2 0 controller The options are Enabled and Disabled 3 3 4 18 Legacy USB Support Select Enabled to use Legacy USB devices If this item is set to Auto Legacy USB support will be automatically enabled if a legacy USB device is installed on the mother
88. ng Enhanced will set SATA 2 to native SATA mode The options are Dis abled and Enhanced IDE Detect Timeout sec Use this feature to set the time out value for the BIOS to detect the ATA ATAPI devices installed in the system The options are 0 sec 5 10 15 20 25 30 and 35 Primary IDE Master Slave Secondary IDE Master Slave Third IDE Master and Fourth IDE Master These settings allow the user to set the parameters of Primary IDE Master Slave Themis Computer BIOS Setup Utility Advanced Setup Configurations Secondary IDE Master Slave Third and Fourth IDE Master slots Hit lt Enter gt to activate the following submenu screen for detailed options of these items Set the correct configurations accordingly The items included in the submenu are Type Select the type of device connected to the system The options are Not Installed Auto CD DVD and ARMD LBA Large Mode LBA Logical Block Addressing is a method of addressing data on a storage drive In the LBA mode the maximum drive capacity is 137 GB For drive capacities over 137 GB your system must be equipped with a 48 bit LBA mode addressing If not contact your manufacturer or install an ATA 133 IDE controller card that supports 48 bit LBA mode The options are Disabled and Auto Block Multi Sector Transfer Block Mode boosts the IDE drive performance by increasing the amount of data transferred Only 512 bytes of data can be transferred per interrupt
89. nts a boot prompt You can then boot Red Hat Enterprise Linux or any other operating system that you have configured the boot loader to boot see Figure C 11 on page C 9 The first sector of your boot partition This is recommended if you are already using another boot loader on your system In this case your other boot loader takes control first You can then configure that boot loader to start GRUB which then boots Red Hat Enterprise Linux If your system only uses Red Hat Enterprise Linux you should choose the MBR C 9 Themis Computer RES 32XR3 FIO Installation Manual C 2 12 Click the Change Drive Order button if you would like to rearrange the drive order or if your BIOS does not return the correct drive order Changing the drive order may be useful if you have multiple SCSI adapters or both SCSI and IDE adapters and you want to boot from the SCSI device Click Next Step 12 RED HAT ENTERPRISE LINUX 5 Network Devices Active on Boot Device IPv4 Netmask IPv Prefix Edit Hostname Set the hostname automatically via DHCP M manually rhelS tocaidomain e g host domain com Miscellaneous Settings Diteiease Notes ke Back Aer Next Figure C 12 Network Devices List Step 12 The installation program automatically detects any network devices you have and displays them in the Network Devices list see Figure C 12 on page C 10 Once you have selected a network device click Edit Themis
90. ors 2 1 Index 3 Themis Computer RES 32XR3 FIO Installation Manual Index 4 Themis Computer Place Stamp Here Themis Computer 47200 Bayside Parkway Fremont CA 94538 Attn Publications Department Fold here tape at top to seal lt a SINSHL Reader Comment Card We welcome your comments and suggestions to help improve the RES 32XR3 Installation Manual FIO Please take time to let us know what you think about this manual e Information provided in the manual was complete Agree Disagree Not Applicable___ e Information was well documented and easy to follow Agree Disagree ___ Not Applicable e Information was easily accessible Agree Disagree Not Applicable e The manual was useful Agree___ Disagree___ Not Applicable___ Please write down any comments you may have about this manual including how it can be improved Name Title Company Address
91. ort 2 Mode This feature allows the user to set the mode for Serial Port B The options are Nor mal IR Infra Red and ASK IR Themis Computer BIOS Setup Utility 3 3 7 2 3 3 8 3 3 8 1 3 3 8 2 3 3 8 3 3 3 8 4 3 3 8 5 Advanced Setup Configurations Onboard Floppy Controller Select Enabled to enable the onboard floppy controller The options are Disabled and Enabled Remote Access Configuration Remote Access This allows the user to enable the Remote Access feature The options are Disabled and Enabled If Remote Access is set to Enabled the following items will display Serial Port Number This feature allows the user to decide which serial port to be used for Console Redi rection The options are COM 1 and COM 2 Base Address IRA This item displays the based address and IRQ of the serial port specified above Serial Port Mode This feature allows the user to set the serial port mode for Console Redirection The options are 115200 8 n 1 57600 8 n 1 38400 8 n 1 19200 8 n 1 and 9600 8 n 1 Flow Control This feature allows the user to set the flow control for Console Redirection The options are None Hardware and Software Redirection After BIOS POST Select Disabled to turn off Console Redirection after Power On Self Test POST 3 19 Themis Computer RES 32XR3 FIO Installation Manual J 3 3 8 6 3 3 8 7 3 3 8 8 3 3 9 3 3 9 1 Select Always to keep
92. ory detected in the system 8 beeps Display memory read write error Video adapter missing or with faulty memory 1 continuous beep w Front Panel OH LED on System Overheat 1 continuous beep with the front panel OH LED on Table 1 BIOS Error Beep Codes Themis Computer Appendix Connector Pinouts This appendix provides connector pinouts for all standard user I O interfaces on the front I O panel of the RES 32XR3 FIO A 1 PS 2 Keyboard and Mouse The RES 32XR3 FIO provides a 6 pin female mini DIN connector for the PS 2 key board and another for the PS 2 mouse Signals for both connectors are defined in Table A 1 Table A 1 PS 2 Keyboard Mouse Pinout and Signal Descriptions Pin Signal Name 1 Keyboard mouse data 2 N C 5 6 3 Ground 3 4 4 Vcc gt 5 Keyboard mouse clock 6 N C A 1 Themis Computer RES 32XR3 FIO Installation Manual A 2 A 3 USB Ports The RES 32XR3 FIO supports six USB Universal Serial Bus port connectors see Figure A 1 for a connector pinout USB 0 thru USB 5 on the front I O panel Pinout signal descriptions are listed in Table A 2 Figure A 1 USB Connector Pinout Table A 2 USB Connector Pinout Signal Descriptions Pin Signal Name Pin Signal Name 1 5V 3 PO 2 PO 4 GND Serial Port The RES 32XR3 FIO supports one male DB9 serial port connector on the front I O p
93. r slide brackets to the outside slide section using the screws washers and nuts provided with the slide kit 4 With all slide brackets securely attached to both the right and left outside slide sections install both sections to the inside right and inside left of a 19 rack with two bolts per bracket making sure there is adequate room for the 3 RU height 5 25 of a RES 32XR3 FIO system nn Carefully insert the RES 32XR3 FIO system into the 19 rack so that the in side slides on both sides of the chassis travel smoothly into the channels of the outside slide sections Push the system into the rack until the mounting brack ets on the front of the chassis are flush with the front of the rack 6 Secure the RES 32XR3 FIO system to the 19 rack with two bolts on each side B 2 Themis Computer Rack Mount Slide Installation Outside slide section Se Ag Ng C Attach the rear long slide bracket to the outside slide section with screws washers and nuts included in slide kit ek AY W I Ma A SE d VK Leg f A e TKD EN B Attach the front short slide bracket to the outside slide section with screws washers and nuts included in slide kit A Attach both inside slide sections to the left and right sides of the RES 32XR3 chassis with 8 32 screws included in slide kit Figure B 2 RES 32XR3 FIO Rack Mount Slide Installation B 3 Themis Computer RES 32XR3
94. r Socket and LED on the RES 32XR3 FIO 2 15 Themis Computer RES 32XR3 FIO Installation Manual 2 3 2 Getting Started 2 3 2 1 Configuration 1 Make sure all storage drives are installed see SATA Storage Drive page 2 9 Drive ID numbers are shown in Figure 2 8 on page 2 9 Changes may be made through the BIOS 2 Connect a multiscan monitor to the VGA connector 3 Attach a PS 2 keyboard and mouse to the appropriate connectors on the front VO panel of the RES 32XR3 FIO see Figure 1 5 on page 1 7 2 3 2 2 Turning The System On 1 Plug the AC power cord from each of the RES 32XR3 FIO power supplies into a live AC outlet The LED on each power supply will turn on when AC power is enabled 2 On the front of the RES 32XR3 FIO push the system power on off button see Figure 2 14 This will cause the system POWER LED to light green Power LED e S ad M Il d S e System Power _ On Off Button TRES SX ASIFIG OO j a lt d rr E S LAH ACHAEA ne a6 6444444 64446 44 44 Figure 2 14 System Power Button and LED on the RES 32XR3 FIO Front 2 3 2 3 Linux Installation The subject of installing the Linux operating system onto the RES 32XR3 FIO is detailed in Appendix C Red Hat Enterprise Linux 5 Installation 2 16 Themis Computer Installation and Operation Operation 2 3 3 Turning the System Off Caution Before turning your system off
95. ration 3 3 17 1 PEF Support Select Enabled to enable the function of Platform Event Filter PEF which will interpret BMC events and perform actions based on pre determined settings or events and performs actions based on pre determined settings or traps under IPMI 1 5 specifications For example powering the system down or sending an alert when a triggering event is detected The default is Disabled The following items will display if this item is set to Enabled PEF Action Global Control Available if PEF Support is en abled These are the different actions based on BMC events The options are Alert Power Down Reset System Power Cycle OEM Action Diagnostic Interface Alert Startup Delay Available if PEF Support is enabled This feature inserts a delay during startup for PEF alerts The options are Enabled and Disabled Startup Delay Available if PEF Support is enabled This feature enables or disables startup delay The options are Enabled and Dis abled Event Message for PEF Action Available if PEF Support is en abled This enables or disables Event Messages for PEF action Refer to Table 24 6 of the IPMI 1 5 Specification for more information at www intel com The options are Dis abled and Enabled 3 3 17 2 BMC Watch Dog Timer Action This feature allows the BMC to reset or power down the system if the OS hangs or crashes The options are Disabled Reset System Power Down Power Cycle Themis Computer
96. re in the lower power supply e Warns that there is a failure in the upper power supply qe oN Om Overheat Fan Fail Normally OFF RED light when tem perature limits are ex ceeded e Warns that the system is exceeding specified temperature parameters The CPU overheat warning function must be enabled in the BIOS thus allowing the user to define an overheat temperature which when exceeded trig gers the overheat warning LED N A LAN1 and LAN2 Each Ethernet port contains two LEDs e The color of the left LED when facing the port indicates the LAN connection speed Off 10 MHz Green 100 MHz Amber 1 GHz e The right LED when lit indicates LAN activity a NIC Network Interface Controller Themis Computer Overview and Specifications System LEDs and I O Connectors Table 1 5 O Connectors Connector Description PS 2 Mouse e 6 pin mini DIN female connector to attach a PS 2 mouse device PS 2 Keyboard e 6 pin mini DIN female connector to attach a PS 2 keyboard device USB 0 thru USB 5 Hi Speed USB 2 0 Serial Ports e Six 4 pin USB connectors to attach serial devices to USB Port 0 thru USB Port 5 Note Four additional USB ports can be accessed directly from the motherboard COM 1 Serial Port e One DB9 male connector to attach a serial device to the COM 1 port VGA Port e 15 pin VGA connector to attach
97. rect special incidental or consequential dam ages arising from a BIOS update If you need to update the BIOS do not shut down or reset the system while the BIOS is updating This is to avoid possible boot fail ure How to Recover the AMIBIOS Image Main BIOS Block An AMIBIOS flash chip consists of a boot sector block and a main BIOS code block a main BIOS image The boot sector block contains critical BIOS code including memory detection and recovery code to be used to flash a new BIOS image if the original BIOS Image is corrupted When the system is powered on the boot sector code executes first Once it is completed the main BIOS code will con tinue with system initialization and complete the bootup process Note BIOS Recovery described below is used when the main BIOS block crash es However when the BIOS Boot sector crashes you will need to send the moth erboard back to Supermicro for RMA repairs Themis Computer RES 32XR3 FIO Installation Manual 3 7 1 3 2 3 7 3 3 7 3 1 Boot Sector Recovery from a USB Device This feature allows the user to recover a BIOS image using a USB device without additional utilities needed A user can download the BIOS image into a USB flash device and name the file SUPER ROM for the recovery process to load the file A USB flash device such as a USB Flash Drive a USB CDROM or a USB CDRW device can be used for this purpose 1 Insert the USB device that contain
98. reproduced in any form by photocopy microfilm retrieval system or by any other means now known or hereafter invented without the prior written permission of Themis Computer The information in this publication has been carefully checked and is believed to be accurate However Themis Computer assumes no responsibility for inaccuracies Themis Computer retains the right to make changes to this publication at any time without prior notice Themis Computer does not assume any liability arising from the application or use of this publication or the product s described herein RESTRICTED RIGHTS LEGEND Use duplication or disclosure by the United States Government is subject to the restrictions set forth in DFARS 252 227 7013 tel and FAR 52 227 19 TRADEMARKS and SERVICEMARKS Themis is a registered trademark of Themis Computer Inc Intel is a registered trademark of Intel Corporation Xeon is a trademark of Intel Corporation Red Hat is a registered trademark of Red Hat Inc Linux is a registered trademark of Linus Torvalds All other trademarks servicemarks or registered trademarks used in this publication are the property of their respective owners CE Marking CE This product complies with the European EMC Directive 2004 108 EC and the European Low Voltage Safety Directive 2006 95 EC Safety Precautions Instructions regarding safety precautions during installation operation or maintenance of the equipmen
99. s the new BIOS image the ROM files saved in a root directory into your USB drive 2 While turning the power on press and hold lt Ctrl gt and lt Home gt at the same time until the USB Access LED Indicator comes on This might take a few seconds 3 Once the USB drive LED is on release the lt Ctrl gt and lt Home gt keys AMI BIOS will issue beep codes to indicate that the BIOS ROM file is being updated 4 When BIOS flashing is completed the computer will reboot Do not interrupt the flashing process until it is completed Boot Sector Recovery from an IDE CD ROM This process is almost identical to the process of Boot Sector Recovery from a USB device except that the BIOS image file is loaded from a CD ROM Use a CD R or CD RW drive to burn a CD with the BIOS image file in it and name the file SUPER ROM for the recovery process to load the file Boot Sector Recovery from a Serial Port Serial Flash This process also known as Serial Flash allows the user to use a serial port to load a BIOS image for Boot Sector recovery This feature is usually used for embedded systems that rely on a serial port for remote access and debugging Reguirements In order to use Serial Flash for Boot Sector Recovery you will need to meet the fol lowing requirements The Target system the system that needs BIOS updates must have a serial Themis Computer BIOS Setup Utility BIOS Recovery port and
100. sabled Figure 3 4 Boot Settings Use this feature to configure boot settings 3 9 1 Boot Device Priority This feature allows the user to specify the sequence of priority for the Boot Device The settings are 1st boot device 2nd boot device 3rd boot device 4th boot device 5th boot device and Disabled e Ist Boot Device USB XXXXXXXXX e 2nd Boot Device CD DVD XXXXXXXXX SR Storage Drives This feature allows the user to specify the boot seguence from all available storage drives The settings are Disabled and a list of all storage drives that have been 3 32 Themis Computer BIOS Setup Utility 3 5 3 3 5 4 Boot Configuration detected i e Ist Drive 2nd Drive 3rd Drive etc e Ist Drive SATA XXXXXXXXX Removable Drives This feature allows the user to specify the boot sequence from available Removable Drives The settings are 1st boot device 2nd boot device and Disabled e Ist Drive USB XXXXXXXXX e 2nd Drive CD DVD Drives This feature allows the user to specify the boot sequence from available CD DVD Drives i e Ist Drive 2nd Drive etc 3 33 Themis Computer RES 32XR3 FIO Installation Manual 3 6 Exit Options Select the Exit tab from the AMI BIOS Setup Utility screen to enter the Exit BIOS Setup screen Save Changes and Exit Figure 3 5 Exit Options 3 6 1 Save Changes and Exit When you have completed the system configuration changes select
101. section describes the PC health monitoring features of the RES 32XR3 FIO motherboard All have an onboard System Hardware Monitor chip that supports PC health monitoring An onboard voltage monitor will scan these onboard voltages continuously CPU1 Vcore CPU2 Vcore CPU1 Vtt CPU2 Vtt CPU1 DIMM CPU2 DIMM 1 1V 1 5V 1 8V 3 3V 12V 5V 3 3 Vsb and VBAT Once a voltage becomes unstable a warning is given or an error message is sent to the screen Users can adjust the voltage thresholds to define the sensitivity of the voltage monitor Fan Status Monitor with Firmware Control The PC health monitor can check the RPM status of the cooling fans The onboard CPU and chassis fans are controlled by Thermal Management in the BIOS under Hardware Monitoring in the Advanced section Environmental Temperature Control The thermal control sensor monitors the CPU temperature in real time and will turn on the thermal control fan whenever the CPU temperature exceeds a user defined threshold The overheat circuitry runs independently from the CPU Once it detects that the CPU temperature is too high it will automatically turn on the thermal fan control to prevent any overheat damage to the CPU The onboard chassis thermal Themis Computer RES 32XR3 FIO Installation Manual circuitry can monitor the overall system temperature and alert users when the chassis temperature is too high A Caution To avoid possible system overheating p
102. stant insulation between the equipment and the outer walls of the container If using the original packaging the clear plastic membrane should be placed next to the equipment i e up against the bottom or down against the top The following instructions assume the original packing components are still avail able and in serviceable condition Packing Components The original packing components are shown in Figure E 1 page E 2 They com prise a packing box bottom crush resistant layer and top crush resistant layer The bottom and top crush resistant layers are identical components placed so that the side with the plastic membrane is against the equipment E 1 Themis Computer RES 32XR3 FIO Installation Manual Top Layer Membrane Bottom Layer Packing Container Figure E 1 Packaging Components E 3 Instructions for Re Packing Re assemble the packing material about the eguipment in accordance with the fol lowing instructions See Figure E 2 page E 3 e Inspect the original packing materials for serviceability e Place one crush resistant layer open side down membrane side up in the bot tom of the box e Place the equipment on top of the bottom layer right side up e Place the other crush resistant layer membrane side down open side up on top of the equipment E 2 Themis Computer Re Packing Instructions Instructions for Re Packing e Press down on the top layer to firm
103. support if it is supported by the OS to control ACPI through the Oper ating System Otherwise disable this feature The options are Yes and No 3 3 10 5 Suspend Mode This option is used to select the ACPI State that is used for system suspend The options are S1 POS S3 STR and Auto S1 POS All processor caches are erased and stops executing instructions Power to the CPU s and RAM is maintained but RAM is refreshed S3 STR The CPU has no power and the power supply goes on reduced power mode However main memory RAM is still powered 3 3 10 6 ACPI APIC Support Select Enabled to include the ACPI APIC Table Pointer in the RSDT Root System Description Table pointer list The options are Enabled and Disabled 3 3 10 7 APIC ACPI SCI IRQ When this item is set to Enabled APIC ACPI SCI IRQ is supported by the system The options are Enabled and Disabled 3 3 10 8 Headless Mode This feature is used to enable the system to function without a keyboard monitor and or mouse attached The options are Enabled and Disabled 3 3 10 9 ACPI Version Features The options are ACPI v1 0 ACPI v2 0 and ACPI v3 0 Please refer to ACPI s web site for further explanation http www acpi info 3 3 11 Trusted Computing 3 3 11 1 TCG TPM Trusted Platform Module Support Select Yes on this item and enable the TPM jumper on the motherboard to enable TCG TPM 1 1 1 2 TPM support in order to improve data integrity and network
104. t are given in the section entitled Safety Instructions on page iv WARNINGS and CAUTIONS The definitions of WARNINGS and CAUTIONS as used in this document are given in the Preface in the section entitled Notes Cautions Warnings and Sidebars Themis Customer Support North America South America and Pacific Rim Telephone 510 252 0870 Fax 510 490 5529 E mail support themis com Web Site http www themis com RES 32XR3 FIO Installation Manual Version 1 0 July 2010 Part Number 117611 024 RES 32XR3 FIO Installation Manual Version Revision History Version ET EE July 2010 iii Themis Computer RES 32XR3 FIO Installation Manual Safety Instructions To maximize user safety and ensure correct device operation all instructions con tained in this section should be read carefully Caution Itis important that the user observe all warnings and instructions that are on the device and contained in this manual e The device must be used in accordance with the instructions for use e Electrical installations in the room must correspond to the requirements of respective regulations e Take care that there are no cables particularly mains cables in areas where persons can trip over them e Do not use a mains connection in sockets shared by a number of other power consumers Do not use an extension cable e Only use the mains cable supplied e The unit is completely disconnect
105. tem overheating please be sure to provide adeguate airflow to your system 3 3 9 2 The options are e The Early Alarm Select this setting if you want the CPU overheat alarm including the LED and the buzzer to be triggered as soon as the CPU temper ature reaches the CPU overheat threshold as predefined by the CPU manufac turer The Default Alarm Select this setting if you want the CPU overheat alarm including the LED and the buzzer to be triggered when the CPU temperature reaches about 5 C above the threshold temperature as predefined by the CPU manufacturer to give the CPU and system fans additional time needed for CPU and system cooling In both the alarms above please take immediate action as shown below CPU 1 Temperature CPU 2 Temperature System Temperature This feature displays current temperature readings for the CPUs and the System The following items will be displayed for your reference only CPU 1 Temperature CPU 2 Temperature The CPU Temperature feature will display the CPU temperature status as detected by the BIOS e Low This level is considered as the normal operating state The CPU tem perature is well below the CPU Temperature Tolerance The motherboard fans and CPU will run normally as configured in the BIOS Fan Speed Con trol User intervention No action required e Medium The processor is running warmer This is a precautionary level and generally means that there
106. the two captive Phillips screws see Figure 2 11 to secure both power supplies 2 2 Rack Mounts 2 2 1 Mounting Brackets The rack mount brackets flanges are used to secure the chassis to the 19 rack see Figure 2 12 Handles are used to pull the RES 32XR3 FIO from the rack when rack mount slides have been installed on the sides of the chassis see following sec tion lt n i Right Mounting _ Bracket Figure 2 12 Right Rack Mount Bracket 2 14 Themis Computer Installation and Operation Operation 2 2 2 Rack Mount Slides Optional Rack Mount Slides can be mounted on each side of the RES 32XR3 FIO for the pur pose of sliding the unit in and out of a rack Mounting slides are optional and should be ordered at the time your system is purchased To learn how to install rack mount slides refer to Appendix B Rack Mount Slide Installation Caution Any screws used to mount a slide to a RES 32XR3 FIO chassis must not exceed a length of 3 8 to prevent excessive penetration of the chassis 2 3 Operation 2 3 1 Plugging in the AC Power Cords Before powering on the RES 32XR3 FIO plug in the AC power cords as follows e Plug an AC power cord shipped with unit into the AC power socket on each power supply on the front of the RES 32XR3 FIO see Figure 2 13 _ lt III it wl III Power LED Locking Lever E AC Power Socket Figure 2 13 AC Powe
107. this option to leave the BIOS Setup Utility and reboot the computer so the new system configura tion parameters can take effect Select Save Changes and Exit from the Exit menu and press lt Enter gt 3 6 2 Discard Changes and Exit Select this option to quit the BIOS Setup without making any permanent changes to the system configuration and reboot the computer Select Discard Changes and Exit from the Exit menu and press lt Enter gt 3 34 Themis Computer BIOS Setup Utility 3 6 3 3 6 4 3 6 5 BIOS Recovery Discard Changes Select this option and press lt Enter gt to discard all the changes and return to the AMI BIOS Utility Program Load Optimal Defaults To set this feature select Load Optimal Defaults from the Exit menu and press lt Enter gt Then select OK to allow the AMI BIOS to automatically load Optimal De faults to the BIOS Settings The Optimal settings are designed for maximum system performance but may not work best for all computer applications Load Fail Safe Defaults To set this feature select Load Fail Safe Defaults from the Exit menu and press lt Enter gt The Fail Safe settings are designed for maximum system stability but not for maximum performance 3 7 BIOS Recovery A Caution Do not upgrade the BIOS unless your system has a BIOS related issue Flashing the wrong BIOS can cause irreparable damage to the system In no event shall Themis be liable for direct indi
108. to begin flashing BIOS remotely Note Be sure to complete Steps a to c above guickly because you have a second or less to do so 6 Once you ve completed the instructions given a screen will display to indicate that remote flashing is starting and the new BIOS file is being uploaded 7 To use Hyper Terminal to transfer the XModem protocol by using the Send File dialog under the Transfer menu follow the instructions below to com plete XModem transfers a Select the Transfer menu and enter lt Send gt AMI FLSH HyperTerminal File Edit view Call BAGGI ees Receive File po Capture Text Send Text File Press lt Spa ke remote BIOS flash Regi n remo Capture to Printer 3 y n y Starting remote flash Upload new BIOS file using Kmodem protocol KKKKKI Figure 3 6 AMI FLSH HyperTerminal b Specify the location of the ROM file and select the proper protocol XMo dem Themis Computer BIOS Setup Utility BIOS Recovery c Press lt Send gt to start ROM File extraction See the picture below Folder C Documents and Settings Desktop Filename C Documents and Settings Desktop 3C02 ROM Protocol 09090909 modem v Figure 3 7 ROM File Extraction d Once the ROM file extraction is completed the message New BIOS re ceived OK will display Starting FLASH Recovery NVRAM data will be destroyed CMOS data will be preserved PA
109. u to select your time zone e Using your mouse click on the interactive map to select a specific city represented by a yellow dot A red X appears indicating your selection e You can also scroll through the list at the bottom of the screen to select your time zone Using your mouse click on a location to highlight your selection Click Next Themis Computer C Red Hat Enterprise Linux 5 Installation Installation C 2 15 Step 15 RED H T ENTERPRISE LINUX 5 The root account Is used for administering the system Enter a password for the root user Root Password Confirm sessess _ Betease Notes Back Next Figure C 15 Setting Up Root Account and Password Step 15 Setting up a root account and password is one of the most important steps during your installation Your root account is similar to the administrator account used on Windows NT machines The root account is used to install packages upgrade RPMs and perform most system maintenance Logging in as root gives you complete control over your system see Figure C 15 on page C 13 Click Next C 13 Themis Computer RES 32XR3 FIO Installation Manual C 2 16 Step 16 RED HAT ENTERPRISE LINUX 5 The default installation of Red Hat Enterprise Linux Server includes a set of software applicable for general internet usage What additional tasks would you like your system to include support for Softwar
110. unc tion and allow the onboard fans to constantly run at full speed The Options are Full Speed Server Workstation Desktop and Super Quiet 3 3 9 3 Voltage Readings The following voltage readings will be displayed CPUO Vcore CPU1 Vcore 1 5V 5V 5VSB 12V 3 3Vcc 3 3Vsb and VBAT and Vtt 3 3 10 ACPI Configuration Use this feature to configure Advanced Configuration and Power Interface ACPI power management settings for your system 3 3 10 1 High Performance Event Timer Select Enabled to activate the High Performance Event Timer HPET that produces periodic interrupts at a much higher frequency than a Real time Clock RTC does in synchronizing multimedia streams providing smooth playback and reducing the dependency on other timestamp calculation devices such as an x86 RDTSC Instruc tion embedded in the CPU The High Performance Event Timer is used to replace the 8254 Programmable Interval Timer The options are Enabled and Disabled 3 3 10 2 USB Device Wakeup Select Enable to wake up the system via a USB device when the system is in S3 Sleep or S4 Hibernate State The options are Enabled and Disabled 3 3 10 3 PS2 KB MS Wake Up Select Enable to wake up the system using either the PS2 keyboard or mouse if equipped when the system is in S3 or S4 state The options are Enabled and Dis abled 3 23 Themis Computer RES 32XR3 FIO Installation Manual 3 3 10 4 ACPI Aware O S Enable ACPI
111. up a Boot Loader Password or to configure more advanced boot loader options select the appropriate check box see Figure C 10 on page C 8 To configure more advanced boot loader options such as changing the drive order or passing options to the kernel be sure Configure advanced boot loader options is selected before clicking Next Themis Computer C Red Hat Enterprise Linux 5 Installation C 2 11 Installation Step 11 ect install Boot Loader record on devinda Master Boot Record MBR idev ial First sector of boot partition Change Drive Order force LBAS2 not normally required If you wish to add default options to the boot command enter them into the General kemel parameters field Qeneral keet paranveters Li Release Notes i Hack gt Next Figure C 11 Master Boot Record MBR Step 11 Now that you have chosen which boot loader to install you can also deter mine where you want the boot loader to be installed You may install the boot loader in one of two places e The master boot record MBR This is the recommended place to install a boot loader unless the MBR already starts another operating system loader such as Sys tem Commander The MBR is a special area on your storage drive that is automatically loaded by your computer s BIOS and is the earliest point at which the boot loader can take control of the boot process If you install it in the MBR when your machine boots GRUB prese
112. uration later in the installation The installation program tries to define the appropriate time zone based on what you specify on this screen Once you have made the language selection click Next to continue see Figure C 4 on page C 3 Themis Computer CA RES 32XR3 FIO Installation Manual C 2 5 Step 5 RED HAT ENTERPRISE LINUX 5 vmt ee REES ES En te me sy eter kg Figure C 5 Selecting Layout Type Step 5 Using your mouse select the correct layout type for example U S English for the keyboard you would prefer to use for the installation and as the sys tem default Once you have made the selection click Next to continue see Figure C 5 on page C 4 C 2 6 Step 6 RED HAT ENTERPRISE LINUX 5 Li eer me apnena keypass ta tre kruten gt kere w gt wenu sees tana horn T ra me As rt Tree pmd agm ma ranen m APL rar maroto pesse enter your matatahi Muerte Ae jene DT mee weng eg Eerad rete latin Mare Zeen marrat Seen yoona xXour d Set UG tursa rss e oh CAE Figure C 6 Enter Installation Number Step 6 Enter the installation number if you don t have an installation number select the Skip Entering Installation Number Radio Button Click OK and if you did not enter an installation number you 1l be given a warning Click Skip to continue otherwise click Next to continue see Figure C 6 on page C 4 C 4 Themis Computer C Red Hat Enterprise Linux 5 Installation Installation
113. ure and press lt Enter gt to access the submenu and then type in a new 3 30 Themis Computer BIOS Setup Utility 3 4 4 3 4 5 3 4 6 3 4 7 3 4 8 Security Settings Supervisor Password User Access Level Available when Supervisor Password is set as above Available options are Full Access grants full User read and write access to the Setup Utility View Only allows access to the Setup Utility but the fields cannot be changed Limited allows only limited fields to be changed such as Date and Time No Access prevents User access to the Setup Utility Change User Password Available when a User Password is installed Select this feature and press lt Enter gt to access the submenu and then type in a new User Password Clear User Password Available only when User Password is installed This item allows you to clear a user password after it has been entered Password Check Available when a password is in stalled This item forces the system to prompt for a password only when entering BIOS setup or during each bootup The options are Setup and Always Boot Sector Virus Protection When Enabled the AMI BIOS displays a warning when any program or virus issues a Disk Format command or attempts to write to the boot sector of the storage drive The options are Enabled and Disabled Themis Computer 3 31 RES 32XR3 FIO Installation Manual 35 Boot Configuration Retry Boot Devices Di
114. v able for replacement in case of a fan failure Note Since RES 32XR3 FIO fans are hot swappable it is not necessary to turn off system power in order to remove and replace a fan however it may be necessary to pull the unit from the rack to obtain access to the fans This may af fect a decision whether or not to turn off system power 2 1 6 1 Removing and Installing a 120 mm Fan Perform the following steps to remove and install a 120 mm fan 1 On the rear of the chassis locate the four captive thumb screws for the fan to be replaced see Figure 2 10 2 Unscrew the four captive thumb screws and pull the fan out of the chassis 120 mm Fan 120 mm Fan Captive thumb screws Figure 2 10 The RES 32XR3 FIO 120 mm Fans 2 11 Themis Computer RES 32XR3 FIO Installation Manual 2 12 2 1 7 2 1 7 1 3 When the fan is removed its 4 wire connector will automatically disconnect from the chassis Insert the replacement fan carefully into the empty fan slot until it is flush with the second fan The 4 wire connector will automatically engage its counterpart connector successfully Power Supply Each 750 watt load sharing N 1 redundant power supply can be hot swapped while the system is still on and operational Removing a Power Supply Perform the following steps to remove a power supply 1 Remove the two captive Phillips screws holding the power supply locking bracket to the chassis Store the brack
115. was read by the Processor The options are Enabled and Disabled Patrol Scrubbing A memory error correction scheme that works in the background looking for and correcting resident errors The options are Enabled and Disabled Throttling Closed Loop Throttling Open Loop Throttling improves reliability and reduces power in the processor by automatic voltage control during processor idle states Available options are Disabled and Enabled If Enabled the following items will appear Hysteresis Temperature Closed Loop only Temperature Hysteresis is the temperature lag in degrees Celsius after the set DIMM temperature threshold is reached before Closed Loop Throttling begins The options are Disabled 1 5 C 3 0 C and 6 0 C Guardband Temperature Closed Loop only This is the temperature which applies to the DIMM temperature threshold Each step is in 0 5 C increment The default is 006 Press or on your keyboard to change this value Inlet Temperature This is the temperature detected at the chassis inlet Each step is in 0 5 C increment The default is 070 Press or on your keyboard to change this value 3 11 Themis Computer RES 32XR3 FIO Installation Manual 3 3 4 9 Temperature Rise This is the temperature rise to the DIMM thermal zone Each step is in 0 5 C incre ment The default is 020 Press or on your keyboard to change this value Air Flow
116. we Installation Manual x ED RES 32XR3 FIO Front I O Chassis 3RU 19 Rack Mount Rugged Enterprise Server with X8DAH F Motherboard Configuration Two Quad Core 5500 or Quad Six Core 5600 Xeon CPUs RES 32XR3 FIO Front I O Two Quad Core 5500 or Quad Six Core 5600 Xeon CPUS RES 32XR3 FIO Front I O Two Quad Core 5500 or Quad Six Core 5600 Xeon CPUS RES 32XR3 FIO Front I O Two Quad Core 5500 or Quad Six Core 5600 Keon CPUS RES 32XR3 FIO Front I O Two Quad Core 5500 or Quad Six Core 5600 Xeon CPUS RES 32XR3 FIO Front I O Two Quad Core 5500 or Quad Six Core 5600 Xeon CPUS RES 32XR3 FIO Front I O Two Quad Core 5500 or Quad Six Core 5600 Xeon CPUS RES 32XR3 FIO Front I O Two Quad Core 5500 or Quad Six Core 5600 Keon CPUS RES 32XR3 FIO Front I O Two Quad Core 5500 or Quad Six Core 5600 Xeon CPUS THEMIS THEMIS THEMIS THEMIS THEMIS THEMIS THEMIS THEMIS SE ap a SDE a af af RES 32XR3 FIO Installation SuperMicro Motherboard X8DAH F THEMIS Themis Computer Americas and Pacific Rim 47200 Bayside Parkway Fremont CA 94538 Phone 510 252 0870 Fax 510 490 5529 World Wide Web http www themis com Manual Version 1 0 July 2010 Themis Computer Rest of World 5 Rue Irene Joliot Curie 38320 Eybens France Phone 33 476 14 77 80 Fax 33 476 14 77 89 Copyright 2010 Themis Computer Inc ALL RIGHTS RESERVED No part of this publication may be

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