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Install Manual - Hitachi Solutions America

1. Select an item to view its description sl 4 object s g My Computer A Double click Setup exe file and display the installer dialog et XI Help TyFolders Ug UI X a Eee 2B 8 5 fm a Autorun inf datal cab datal hdr data2 cab E a W ikernel ex Install ico layout bin setup bmp g g fe 5 A Setup exe Setup ini setup inx The dialog below will be displayed Click the Next button InstallShield Wizard Welcome to the InstallShield Wizard for sample database for DNASIS MAX The InstallShield Wizard will install sample database for DNASIS MAX on your computer To continue click Next Next specify the installation location for SequenceDB The initial default location is to install it in the folder below the HSK_DB folder specified during the installation of DNASIS MAX If you choose a location other than the default location make sure there are no spaces in the path name of your database 2004 Hitachi Software Engineering Co Ltd All rights reserved 36 InstallShield Wizard xj Choose Destination Location Select folder where Setup will install files Next specify the installation location for BlastDB The initial default location is to install it in the folder below the HSK DB folder specified during the installation of DNASIS MAX If you choose a location other than the default location make sure there ar
2. amp DNASIS Installer 1 xi DNASIS MAX V2 5 MSDE2000 for DNASIS Installer Install DNASIS MAX before you run this installation program Install m DontigM anager for DNASIS Installer Install DNASIS and MSDE2000 before you run this installation Install Choose the Install button for DNASIS MAX V2 5 and click it to install DNASIS MAX V2 5 When the installation is complete the DNASIS Key Code Manager dialog used for setting up the key code will be displayed Note that DNASIS Key Code Manager may actually be displayed in the background of the installer dialog Note that when DNASIS MAX V2 5 is installed the Phred Phrap Option will still display the version as V2 0 but this does not affect product functionality Copyright C 2003 Hitachi Software M UT Ni DNASIS MAX t Phred Phrap Option Click the OK button to close the DNASIS Key Code Manager dialog Refer to the section below to install MSDE2000 62004 Hitachi Software Engineering Co Ltd All rights reserved 23 2 4 Installing MSDE2000 MSDE2000 is a database engine from Microsoft Corporation and is required for using ContigManager Please refer to Section 2 5 Installing ContigManager for more information Once DNASIS MAX V2 5 is installed the MSDE2000 Install button is activated If a version prior to MSDE2000 SP3 is already installed the message below will be displayed OO X
3. A list of possible Spaces will be displayed Choose the Space to backup and click the Export button The Save As dialog will be displayed Set the location and file name for saving and click the Save button 5 The Export Space dialog will be displayed If the Space includes data check the box for the Include Data option 6 Click the Export button and backup the Space A WN 2004 Hitachi Software Engineering Co Ltd All rights reserved 20 Reconstructing Data After installing DNASIS MAX V2 5 display the Open Space dialog in DNASpace and click the Import button to import the exported file 2 2 Uninstalling DNASIS MAX V1 0 Note Administrative privileges are required for this uninstallation Exit any programs related to DNASIS MAX including ContigManager DNASpace and DNASpace Scheduler Choose Start gt Settings gt Control Panel From the Add Remove Programs menu choose DNASIS and click the Change Remove button Change Remove The dialog shown below will be displayed Choose the Remove toggle button and click the Next button InstallShield Wizard x Welcome Modify repair or remove the program m ie Welcome to the DNASIS Setup Maintenance program This program lets you modify the current installation Click one of the options below C Modify Select new program components to add or select currently installed components to remove C Repair
4. and click the Remove button jj Microsoft SQL Server Desktop Engine DNASIS Remove The dialog below will be displayed Click the Yes button Add Remove Programs B xi D lt 9 Are you sure you want to remove Microsoft SQL Server Desktop Engine DNASIS From your computer 4 4 4 ContigManager From Add Remove Programs choose DNASIS MAX ContigManager and click the Change Remove button 2004 Hitachi Software Engineering Co Ltd All rights reserved 52 DNASIS MAX ContigManager Change Remove The dialog shown below will be displayed Click the OK button x Do you want to completely remove the selected application and all of its components Click the Finish button for InstallShield Wizard to finish the uninstallation procedure 4 4 5 Phred Phrap Option For those customers with the Phred Phrap option only From Add Remove Programs choose DNASIS MAX Phred Phrap Option V2 0 and click the Change Remove button DNASIS MAX Phred Phrap Option V2 0 Change Remove The dialog shown below will be displayed Click the OK button xi Do you want to completely remove the selected application and all of its components Click the Finish button for InstallShield Wizard to finish the uninstallation procedure 4 4 6 SampleDB From Add Remove Programs choose sample database for DNASIS MAX and click the Change Remove button sample database for DNASIS MAX Change Remove
5. 1 3 Installing ContigManager Install the Sample Database Refer to Section 1 4 Installing SampleDB Install the Phred Phrap option This step is only for customers who purchased the optional Phred Phrap package Refer to Section 1 5 Installing the Phred Phrap Option Request that a key code be issued Refer to the Licensing Instructions included with you software Receive a key code from your regional support center See Appendix A User Support Contact Information Set the key code Refer to sections 1 6 1 2 Setting the Key Code and Section 1 6 2 Setting the Key Code for the Phred Phrap Option DNASIS MAX V2 5 is ready to be accessed and used 2004 Hitachi Software Engineering Co Ltd All rights reserved 2 Upgrading from DNASIS MAX V1 0 to DNASIS MAX V2 5 Perform backup for DNASpace Reserved for those customers with the DNASpace option in DNASIS MAX V1 0 Please refer to Section 2 1 1 DNASpace Backup Uninstall DNASIS MAX V1 0 Refer to Section 2 2 Uninstalling DNASIS MAX V1 0 Install DNASIS MAX V2 5 Refer to Section 2 3 Installing DNASIS MAX V2 5 Install MSDE2000 Refer to Section 2 4 Installing MSDE2000 Install ContigManager Refer to Section 2 5 Installing ContigManager Install the Sample Database Refer to Section 2 6 Installing SampleDB Install the Phred Phrap option This is for customers with the Phred Phrap optio
6. Compact Disc icon to open the drive ixi Fie Edit View Favorites Tools Help Ea Back gt Qsearch Gyrolders CB UE GE X A Ed Address e My Computer Go a L BE A My Computer Select an item to view its description 4 object s Double click Setup exe file and display the installer dialog Help TyFolders C4 WS Ui X wa E w Go ContigMana DNASIS DNASIS MSDE2000 For Update DNASIS iS D5 e Autorun inf dnasis max Install ico Setup exe The installer dialog shown below will be displayed 2004 Hitachi Software Engineering Co Ltd All rights reserved 33 jif DNASIS Installer x r DNASIS MAX V2 5 Update r MSDE2000 for DNASIS Installer Install DNASIS MAX before you run this installation program Install r ContigM anager for DNASIS Installer Install DNASIS and MSDE2000 before you run this installation Install Select the Install button for DNASIS MAX Update V2 5 to begin the installation procedure for DNASIS MAX V2 5 Refer to the section below to install MSDE2000 Close Dialog 3 2 Installing MSDE2000 MSDE2000 is a database engine from Microsoft Corporation and is required for using ContigManager Please refer to Section 3 3 Installing ContigManager for more information Once DNASIS MAX V2 5 is installed the MSDE2000 Install button is activated If a version prior to MSDE20
7. MAX Updates for V2 1 1 and click the Change Remove button br DNASIS MAX Updates For v2 1 1 Change Remove From Add Remove Programs choose DNASIS MAX Updates 2 1 1 and click the Change Remove button DNASIS MAX Updates 2 1 1 Change Remove From Add Remove Programs choose DNASIS MAX V2 0 and click the Change Remove button ifa DNASIS MAX V2 0 Change Remove The dialog shown below will be displayed Choose the Remove toggle button and click the Next button 2004 Hitachi Software Engineering Co Ltd All rights reserved 51 InstallShield Wizard xl Welcome Modify repair or remove the program BL SS Welcome to the DNASIS MAX V2 0 Setup Maintenance program This program lets you modify the current installation Click one of the options below C Modify Select new program components to add or select currently installed components to remove Repair ff Reinstall all program components installed by the previous setup Remove E Remove all installed components lt Back e Cancel The dialog shown below will be displayed Click the OK button Confirm File Deletion X Do you want to completely remove the selected application and all of its components Click the Finish button for InstallShield Wizard to finish the uninstallation procedure 4 4 3 MSDE2000 From Add Remove Programs choose Microsoft SQL Server Desktop Engine DNASIS
8. Phrap Option Installation CD into the CD drive to start the installation process Note If the screen does not launch automatically double click the My Computer icon double click on the Compact Disc icon double click Setup exe and start the installation procedure DNASIS Key Code Manager will launch so click the OK button and close the dialog 2 8 Setting Key Codes To use DNASIS MAX and its optional features a key code is required Please obtain and set up the key code before using the product 62004 Hitachi Software Engineering Co Ltd All rights reserved 29 The key code needs to be set up only once during the initialization procedure Once set the key code does not need to be reentered 2 8 1 Setting Key Codes for DNASIS MAX Note Administrative privileges are required for this installation 1 Obtaining a machine ID and the Key Code Choose Start gt Programs gt DNASIS MAX Key Code Manager and launch DNASIS Key Code Manager Click the Unlock button S Copyright C 2003 Hitachi Software Endinecripg CORN Pod erton tl DNASIS MAX aa Phred Phrap Option The Unlock Product dialog will be displayed the Machine ID is displayed in the center row Product Key JDNASIS MAX V2 5 Machine ID JXXAX XXXX XXXX Key Code ag Cancel Note that the Machine ID is unique for each PC To obtain a key code please refer to the Licensing Instructions included in the so
9. The dialog shown below will be displayed Choose the Remove toggle button and click the Next button 2004 Hitachi Software Engineering Co Ltd All rights reserved 53 InstallShield Wizard E 2 l Welcome Modifv repair or remove the program Click the Finish button for InstallShield Wizard to finish the uninstallation procedure 2004 Hitachi Software Engineering Co Ltd All rights reserved 54 62004 Hitachi Software Engineering Co Ltd All rights reserved 55 Appendix A User Support Contact Information Please use the following information to contact your regional support center with questions on using or purchasing DNASIS MAX MiraiBio Inc The Americas Asia and Pacific Regions 1201 Harbor Bay Parkway Ste 150 Alameda CA 94502 U S A Web www miraibio com Tel 1 510 337 2000 Fax 1 510 337 2099 E mail dnasiskey miraibio com For obtaining key codes gene miraibio com For other information or inquiries Hitachi Software Engineering Europe AG Europe Middle East and Africa Regions Neues Kranzler Eck Kurf rstendamm 22 10719 Berlin Germany Web www hitachisoft bio com Tel 49 30 8877 2600 Fax 49 30 8877 2610 E mail dnasis g hitachisoft de For obtaining key codes info bio hitachisoft de For other information or inquiries 62004 Hitachi Software Engineering Co Ltd All rights reserved 56
10. Windows 2000 Windows XP The above refers to English language versions of the OS mentioned RAM 128MB or more Other e 100MB of hard disk space or more CD ROM drive required for the initial installation 1 024x768 displav with 256 colors Internet Explorer 4 0 1 or higher Dedicated Internet connectivitv is recommended Plasmid map display functionality Windows NT Windows 2000 Windows XP is required For the optional Phred Phrap package 1GB of space or more is recommended During Installation Please note the following terms for installation 1 During installation vou must log in as a user with administrative privileges i e the administrator account 2 When upgrading a previous installation of DNASIS Max with this stand alone version of DNASIS Max please make sure the previous version is also a stand alone version not the network version If you have any questions about this please contact your regional support center see Appendix A for more information 2004 Hitachi Software Engineering Co Ltd All rights reserved 3 Using DNASIS MAX The required steps for installing DNASIS Max are illustrated below 1 Installing a New Installation of DNASIS MAX V2 5 Not Upgrading Install DNASIS MAX V2 5 Please refer to Section 1 1 Installing DNASIS MAX V2 5 Install MSDE2000 Refer to Section 1 2 Installing MSDE2000 Install ContigManager Refer to Section
11. be accessed and used 2004 Hitachi Software Engineering Co Ltd All rights reserved Contents Chapter 1 DNASIS MAX V2 5 New Installation 9 1 1 Installing DNASIS MAX V2 5 ceste reet riot ntt non er essi 9 1 2 Installing MSDE2000 eere eee rete deae eve 11 1 3 Installing ContigManager EE EEDE E EE E ETIEN TEE nnne 12 1 4 Installing SampleDB i isir pre eere e er eere 12 1 4 1 What is SampleDB 2 nr nnnm nnne nnns 12 1 42 installation xiii iii RE aa aa 12 1 5 Installing the Phred Phrap Option nn 16 1 6 Setting Key Codes cett er e rrr 16 1 6 1 Setting Key Codes for DNASIS MAX 16 1 Obtaining a Machine ID and the Key Code nn 16 2 Setting the Key Code snanar 17 1 6 2 Setting Key Codes for the Phred Phrap Option 18 Chapter 2 Updating from DNASIS MAX V1 0 to V2 5 20 2 1 DNASIS MAX V1 0 Backup ssseetette tette entente 20 2 1 1 Database Backup sidien i ew etre terere perte ete 20 2 1 2 Ve tor Data Ba kUp iss etre ee epe epe eere B 20 24 3 Space Backup erret teet e ar tet Der eee ete tr 20 2 2 Uninstalling DNASIS MAX V1 0 ierant hatten trasmettere preceded 21 2 3 Installing DNASIS MAX Aib secessu eere a l 22 2 4 Installing MSDE2000 EE ttt tta tee P EE 24 2 5 Installing ContigManager nanna nanna 25 2 6 Installing Sample DB iiig aa Deo eoe nere ee pe 25 2 6 1 What is SampleDB 2 nn rna nn nn nn nnne nnns 25 2 7 Installing the Phred Phrap Op
12. default location make sure there are no spaces in the path name of your database InstallShield Wizard xl Choose Destination Location Select folder where Setup will install files cy e Please select sequence database directory If there are same database in this directory they will be OVERWRITTEN Browse InstallShield Back Cancel Next specify the installation location for BlastDB The initial default location is to install it in the folder below the HSK DB folder specified during the installation of DNASIS MAX If you choose a location other than the default location make sure there are no spaces in the path name of your database 62004 Hitachi Software Engineering Co Ltd All rights reserved 27 InstallShield Wizard xi Choose Destination Location Select folder where Setup will install files D e Please select blast database directory If there are same database in this directory they will be OVERWRITTEN Browse InstallShield Back Cancel Next specify the installation method InstallShield Wizard xl Setup Type Choose the setup type that best suits your needs amp SS Click the type of Setup you prefer Custom r Description InstallShield Back Cancel If you choose Custom you may select the databases to install If you choose Typical all databases that are registered Sequence DB has 2 Blast DB has
13. 00 SP3 is already installed the message below will be displayed Question X lt 9 MSDE 2000 Service Pack 3 is not installed Install MSDE 2000 Service Pack 3 Yes No If you choose No and cancel the installation ContigManager will not be installable If MSDE2000 SP3 is already installed the Install button will not be activated Please skip this section and move forward to Section 3 3 Installing ContigManager Click the Install button for MSDE2000 for DNASIS Installer to install MSDE2000 The installation will take more than five minutes A message asking you to wait until the installation is complete will be displayed Click the OK button to start the installation 62004 Hitachi Software Engineering Co Ltd All rights reserved 34 Setur s This process may take a very long time more than Five minutes even though the progress bar is completed Please WAIT until the installing is finished Once the MSDE2000 installation is complete you will need to restart your PC If you do not reboot after the MSDE2000 installation ContigManager will not install correctly After restarting double click Setup exe from the DNASIS MAX installation CD Now refer to the section below to install ContigManager 3 3 Installing ContigManager Note Administrative privileges are required for this installation Once MSDE2000 is installed the Install button for ContigManager for DNASIS Installer will become a
14. 13 will be installed If you choose Custom click the Next button for the following dialog Put check marks next to those components you want to install and then click the Next button to start the installation If you choose Typical click the Next button to continue the dialog will not be displayed 62004 Hitachi Software Engineering Co Ltd All rights reserved 28 InstallShield Wizard xl Select Components Choose the components Setup will install a Select the components you want to install and clear the components you do not want to install Description BCT Sequence database for blast IMAM search yj PHG iv PIR vj UniGene At vj UniGene Cel vj UniGene Cre vj UniGene Dm ivi UniGene Os zl Space Required on C 1065644 K Space Available on C 203924 K Installshield Back Cancel Once installation is complete a dialog will be displayed so click the Finish button to exit the installer InstallShield Wizard E InstallShield Wizard Complete Setup has finished installing sample database for DNASIS on your computer lt Back Cancel 2 7 Installing the Phred Phrap Option For those customers with the Phred Phrap option only Please note Before installing the Phred Phrap option launch DNASIS MAX once If you do not launch DNASIS MAX at least once before installing the Phred Phrap option the Phred Phrap feature may not function correctly Insert the Phred
15. 3 2 4 3 3 4 3 4 4 3 5 4 4 4 4 1 4 4 2 4 4 3 4 4 4 4 4 5 4 4 6 Removing DNASIS MAX V1 0 tette tette 44 Uninstalling DNASIS MAX V2 Q a ceras cepa tnnt t Decent eacus reca caeca 45 DNASIS MAX V2 D escasas buste ee d necis B eh Seu 45 MSDE2000 eor o e a o m aa nm 46 GontigMarnager t e rette tt 46 Phred Phrap Option oes A e eee lear eevee 47 Uninstalling a New Installation of DNASIS MAX V2 5 47 DNASIS 5 MAX VA Dice tque tas etfs tac ad che UE dd 47 MSDE2000 casio ae ee i derat 48 ContigMariager opere ER i db codices b ea euet 48 Phred Phrap Optioni iii rr n net tere rr 49 SampleDB keieren ate Ep HE Fee re egre eter erts tae rers 49 Uninstalling a DNASIS MAX V2 0 to V2 5 Update sss 50 DNASIS MAX A aa Ludo feu te t fcd 50 DNASISS MAX 20 cate a aeta avi clyde a 51 MSDE2000 ea A nee one e neat ene nere e eh tn e 52 GontigManagersec c ux cx IL ID c x c dee 52 Phred Phirap Option 4 a AA 53 Grub E 53 62004 Hitachi Software Engineering Co Ltd All rights reserved 8 Chapter 1 DNASIS MAX V2 5 New Installation 1 1 Installing DNASIS MAX V2 5 Note Administrative privileges are required for this installation This section gives instructions for a new installation of DNASIS MAX V2 5 f you are upgrading from a previous version of DNASIS MAX please see the upgrade instructions below Insert the DNASIS MAX into the CD drive The installation screen will automatically launch
16. A MSDE 2000 Service Pack 3 is not installed Install MSDE 2000 Service Pack 3 Yes No If you choose No and cancel the installation ContigManager will not be installable If MSDE2000 SP3 is already installed the Install button will not be activated Please skip this section and move forward to Section 2 5 Installing ContigManager Choose the Install button for MSDE2000 for DNASIS Installer to install MSDE2000 ief DNASIS Installer xi DNASIS MAX V2 5 MSDE2000 for DNASIS Installer DNASIS MAX before you run this installation program pstall DN Contig anager for DNASIS Installer Install DNASIS and MSDE2000 before you run this installation Install The installation will take more than five minutes A message asking you to wait until the installation is complete will be displayed Click the OK button to start the installation Close Dialog X This process may take a very long time more than Five minutes even though the progress bar is completed Please WAIT until the installing is finished 62004 Hitachi Software Engineering Co Ltd All rights reserved 24 Once the MSDE2000 installation is complete you will need to restart your PC If you do not reboot after the MSDE2000 installation ContigManager will not install correctly After restarting double click Setup exe from the DNASIS MAX installation CD Now refer to the section below to install Co
17. All rights reserved 48 DNASIS MAX ContigManager Change Remove The dialog shown below will be displayed Click the OK button x Do you want to completely remove the selected application and all of its components Click the Finish button for InstallShield Wizard to finish the uninstallation procedure 4 3 4 Phred Phrap Option For those customers with the Phred Phrap option only From Add Remove Programs choose DNASIS MAX Phred Phrap Option V2 0 and click the Change Remove button DNASIS MAX Phred Phrap Option V2 0 Change Remove The dialog shown below will be displayed Click the OK button xi Do you want to completely remove the selected application and all of its components Click the Finish button for InstallShield Wizard to finish the uninstallation procedure 4 3 5 SampleDB From Add Remove Programs choose sample database for DNASIS MAX and click the Change Remove button sample database for DNASIS MAX Change Remove The dialog shown below will be displayed Choose the Remove toggle button and click the Next button 62004 Hitachi Software Engineering Co Ltd All rights reserved 49 InstallShield Wizard B xj Welcome Modify repair or remove the program m css Welcome to the sample database for DNASIS MAX Setup Maintenance program This program lets you modify the current installation Click one of the options below C Modify Select new program co
18. Code field is case sensitive Be sure to select the correct case for each letter when entering the key code 1 6 2 Setting Key Codes for the Phred Phrap Option Note Administrative privileges are required for setting the key code DNASIS MAX offers support for the Phred Phrap option Once Phred Phrap is installed you will need to input a key code to access this feature Open the DNASIS Key Code Manager dialog as shown in the steps above Choose the Phred Phrap Option and click the Unlock button The Unlock Product dialog will be displayed Make sure that the Product Key field is set to Phred Phrap Option V2 0 Unlock Product Product Key Phred PhapOpionv20 gt MachnelD D9e0cXo0cX0 CS Key Cade aa Cancel Enter the key code you obtained for the Phred Phrap option and click the OK button When the lock icon to the left of the Phred Phrap Option field disappears in DNASIS Key Code Manager the the Phred Phrap option has been enabled and may be used 62004 Hitachi Software Engineering Co Ltd All rights reserved 18 DNAS f Copyright C 2003 Hitachi Software Endineerigd Gp b i Product 1 vesi 2004 Hitachi Software Engineering Co Ltd All rights reserved 19 Chapter 2 Updating from DNASIS MAX V1 0 to V2 5 2 1 DNASIS MAX V1 0 Backup 2 1 4 Database Backup The databases installed during the installation of DNASIS MAX V1 0 will be deleted when DNASIS MAX V1 0 i
19. Note If the screen does not launch automatically double click the My Computer icon Mv Computer Double click the Compact Disc icon to open the drive Ini xi File Edit View Favorites Tools Help pe ecu o tal Osh Cures BIEB X oll IT a e Go 1 til 3 Floppy Local Disk C DNASISMAX V Control Panel A My Computer A 255A D Select an item to view its description 4 object s g My Computer Double click Setup exe file and display the installer dialog KONT nini Help d Folders C4 iS GE X A Eg ContigMana DNASIS DNASIS MSDE2000 for Update DNASIS mm ASE m Ex DS e Autorun inf dnasis max Install ico Setup exe The installer dialog shown below will be displayed 62004 Hitachi Software Engineering Co Ltd All rights reserved 9 jif DNASIS Installer E x DNASIS MAX V2 5 m MSDE2UD0 for DNASIS Installer Install DNASIS MAX before you run this installation program Install r ContigM anager for DNASIS Installer Install DNASIS and MSDE2000 before you run this installation Install Click the Install button for IDNASIS MAX V2 5 to begin the installation of DNASIS MAX V2 5 If you click the Install button and the dialog shown below appears DNASIS MAX V1 0 is already installed on your PC Please refer to Chapter 2 Updating from DNASIS MAX V1 0 to V2 5 Ee xi DNASIS MAX V1 0 is installed P
20. S MAX 2 6 2 Installation Insert the SampleDB installer CD into the CD drive The install screen will launch automatically Note If the screen does not launch automatically double click the My Computer icon iC ur SeN Mv Computer Double click the Compact Disc icon to open the drive El My Computer Inl xl File Edit View Favorites Tools Help EJ Back fajl GQsearch Gyrolders 3 UE IE X A Ea Address a Go Select an item to view its description 4 object s g My Computer A Double click Setup exe file and display the installer dialog XI He E G4 Folders G GS Bn ox A E gt Go m s o a oO Autorun nf datal cab datal hdr data2 cab E a w ikernel ex Install ico layout bin setup bmp a T xk a Setup exe Setup ini setup inx The dialog shown below will be displayed so click the Next button to continue 62004 Hitachi Software Engineering Co Ltd All rights reserved 26 InstallShield Wizard Welcome to the InstallShield Wizard for sample database for DNASIS MAX The InstallShield Wizard will install sample database for DNASIS MAX on your computer To continue click Next Next specify the installation location for SequenceDB The initial default location is to install it in the folder below the HSK DB folder specified during the installation of DNASIS MAX If you choose a location other than the
21. Sequence Data Ana Software DNASIS MAX Installation Manual Stand alone Version Part No C 51125 10203 2004 Hitachi Software Engineering Co Ltd All rights reserved 1 Introduction Thank you for choosing DNASIS MAX This manual provides detailed installation instructions for DNASIS MAX stand alone version First Edition 2004 03 2004 Hitachi Software Engineering Co Ltd All rights reserved DNASIS is a registered trademark of Hitachi Software Engineering Co Ltd e Windows is a registered trademark of Microsoft Corporation NCBI and Blast software are developed by the National Center for Biotechnology Information Pentium is a registered trademark of Intel e Phred Phrap is licensed from the University of Washington The Phred Phrap option for DNASIS is a product of MiraiBio USA e The unauthorized duplication and distribution of this manual and its contents are strictly forbidden The contents of the manual may change without prior notice Should this manual include errors or imprecise statements Hitachi Software Engineering Co Ltd will assume no liability for any damage resulting from the use of this product 2004 Hitachi Software Engineering Co Ltd All rights reserved Software Operating Environment Hardware Pentium or higher microprocessor computer Pentium IIl 600MHz is recommended for optimal performance OS Windows 98 Windows Me Windows NT 4 0 SP6 and highery
22. aunch Vector Database Manager and click the Import button to import the backup file 3 Space Backup For those customers with the DNASpace option only When DNASIS MAX V1 0 is removed any custom Space that you created will also be removed We recommend that you back up those Spaces that you have created The procedure is as follows 2004 Hitachi Software Engineering Co Ltd All rights reserved 43 Launch DNASpace Choose File then Open Space A list of possible Spaces will be displayed Choose the Space to backup and click the Export button The Save As dialog will be displayed Set the location and file name for saving and click the Save button 5 The Export Space dialog will be displayed If the Space includes data check the box for the Include Data option 6 Click the Export button and backup the Space A w N gt Reconstructing Data After installing DNASIS MAX V2 5 display the Open Space dialog in DNASpace and click the Import button to import the exported file 4 1 2 Removing DNASIS MAX V1 0 Note Administrative privileges are required for this uninstallation Exit any programs related to DNASIS MAX including ContigManager DNASpace and DNASpace Scheduler Choose Start gt Settings gt Control Panel From the Add Remove Programs menu choose DNASIS and click the Change Remove button Change Remove The dialog shown below will be displaye
23. ctivated Click the Install button for ContigManager for DNASIS Installer to begin installing ContigManager A dialog will be displayed announcing the completion of the installation so click the Finish button to exit and close the installer Now refer to the section below to install SampleDB 3 4 Installing SampleDB To conduct the tutorial included in the DNASIS MAX User s Manual installing SampleDB is required Be sure to first install ContigManager then install SampleDB 3 4 1 What is SampleDB SampleDB refers to the sample database for use with DNASIS MAX It is comprised of SequenceDB and BlastDB SequenceDB stores DNA and Amino Acid sequences you can use Sequence DB Manager to display and edit sequences It is also used for Smith Waterman searches The Blast DB is a database reserved for Blast searches and is used for local Blast searches in DNASIS MAX 3 4 2 Installation Insert the SampleDB Installation CD into the CD drive The installer screen will launch automatically Note If the screen does not launch automatically double click the My Computer icon FET NUES My Computer Double click the Compact Disc icon to open the drive 62004 Hitachi Software Engineering Co Ltd All rights reserved 35 iBix File Edit View Favorites Tools Help Back fey Asearh Gyroders BIS IE OX A lt L Ea Address e My Computer gt Go L ua 314 Floppy My Computer A
24. d Choose the Remove toggle button and click the Next button InstallShield Wizard i xj Welcome Modify repair or remove the program Ly GS Welcome to the DNASIS Setup Maintenance program This program lets you modify the current installation Click one of the options below C Modify A Select new program components to add or select currently installed l components to remove C Repair ff Reinstall all program components installed by the previous setup Le Remove F3 Remove all installed components The dialog shown below will be displayed Click the OK button 2004 Hitachi Software Engineering Co Ltd All rights reserved 44 Confirm File Deletion X Do you want to completely remove the selected application and all of its components Click the Finish button for InstallShield Wizard to finish the uninstallation procedure 4 2 Uninstalling DNASIS MAX V2 0 4 2 1 DNASIS MAX V2 0 Note Administrative privileges are required for this uninstallation Exit any programs related to DNASIS MAX including ContigManager DNASpace and DNASpace Scheduler If you have installed the patches for DNASIS Max V2 0 IDNASIS MAX Updates for V2 1 1 and DNASIS MAX Updates 2 1 1 you will want to remove those first From Add Remove Programs choose DNASIS MAX Updates for V2 1 1 and click the Change Remove button br DNASIS MAX Updates For v2 1 1 Change Remove From Add Remove Progra
25. e Yes button Add Remove Programs a xi pu lt 9 Are you sure you want to remove Microsoft SQL Server Desktop Engine DNASIS From your computer 4 2 3 ContigManager From Add Remove Programs choose DNASIS MAX ContigManager and click the Change Remove button 2004 Hitachi Software Engineering Co Ltd All rights reserved 46 DNASIS MAX ContigManager Change Remove The dialog shown below will be displayed Click the OK button Confirm File Deletion 1 X Do you want to completely remove the selected application and all of its components Click the Finish button for InstallShield Wizard to finish the uninstallation procedure 4 2 4 Phred Phrap Option For those customers with the Phred Phrap option only From Add Remove Programs choose DNASIS MAX Phred Phrap Option V2 0 and click the Change Remove button DNASIS MAX Phred Phrap Option V2 0 Change Remove The dialog shown below will be displayed Click the OK button Click the Finish button for InstallShield Wizard to finish the uninstallation procedure 4 3 Uninstalling a New Installation of DNASIS MAX V2 5 4 3 1 DNASIS MAX V2 5 Exit any programs related to DNASIS MAX including ContigManager DNASpace and DNASpace Scheduler From Add Remove Programs choose DNASIS MAX V2 5 and click the Change Remove button ifa DNASIS MAX v2 5 Change Remove The dialog shown below will be displayed Choose the R
26. e dialog shown below will be displayed so click the Next button to continue InstallShield Wizard Welcome to the InstallShield Wizard for sample database for DNASIS MAX The InstallShield Wizard will install sample database for DNASIS MAX on your computer To continue click Next Next specify the installation location for SequenceDB The initial default location is to install it in the folder below the HSK DB folder specified during the installation of DNASIS MAX If you choose a location other than the default location make sure there are no spaces in the path name of your database 62004 Hitachi Software Engineering Co Ltd All rights reserved 13 f InstallShield Wizard Choose Destination Location Select folder where Setup will install files Next specify the installation location for BlastDB The initial default location is to install it in the folder below the HSK DB folder specified during the installation of DNASIS MAX If you choose a location other than the default location make sure there are no spaces in the path name of your database LT xi Choose Destination Location Select folder where Setup will install files Next specify the installation method 2004 Hitachi Software Engineering Co Ltd All rights reserved 14 InstallShield Wizard xi Setup Type Choose the setup type that best suits your needs m e Click the type of Setup you pref
27. e no spaces in the path name of your database Choose Destination Location INS Select folder where Setup will install files B A Next specify the installation method 2004 Hitachi Software Engineering Co Ltd All rights reserved 37 InstallShield Wizard xi Setup Type Choose the setup type that best suits your needs m e Click the type of Setup you prefer Custom r Description InstallShield Back Cancel If you choose Custom you may select the databases to install If you choose Typical all databases that are registered Sequence DB has 2 Blast DB has 13 will be installed If you choose Custom click the Next button for the following dialog Put check marks next to those components you want to install and then click the Next button to start the installation If you choose Typical click the Next button to continue the dialog will not be displayed InstallShield Wizard 4 xl Select Components Choose the components Setup will install a e Select the components you want to install and clear the components you do not want to install Description BCT Sequence database for blast iz MAM search PHG MPIR vj UniGene At vj UniGene Cel M UniGene Cre vj UniGene Dm iwi UniGene Os xz Space Required on C 1065644 K Space Available on C 209924 K InstallShield teen Once installation is complete a dialog will be displayed so clic
28. ed 41 DNAS f Copyright C 2003 Hitachi Software Endineerigd Gp b i Product 1 vesi 2004 Hitachi Software Engineering Co Ltd All rights reserved 42 Chapter4 Uninstalling DNASIS MAX 4 1 Uninstalling DNASIS MAX V1 0 4 1 14 DNASIS MAX V1 0 Backup 1 Database Backup The databases installed during the installation of DNASIS MAX V1 0 will be deleted when DNASIS MAX V1 0 is removed We recommend that you back up those databases that you have modified and added to The procedure is as follows 1 Move to the folder where the database is stored 2 If installed according to initial default values from My Computer choose Local Disc C and open the HSK DB folder 3 Copy the database file contained in the file to another folder and perform backup DNASIS MAXDatabase Storage Folder AAMotifDB BlastDB GenomeDB NAMoitfDB MultipleAlignmentProfile SequenceDB Reconstructing Data After installing DNASIS MAX V2 5 copy the backup file to the folder with the corresponding database 2 Vector Data Backup To backup Vector data use the Vector Database Manager from DNASIS MAX 1 Launch DNASpace and choose the option Vector Database Manager from the Database menu 2 The Vector Database Manager will launch 3 Choose the vector data to backup and click the Export button to save it in a separate folder Reconstructing Data After installing DNASIS MAX V2 5 l
29. emove toggle button and click the Next button 2004 Hitachi Software Engineering Co Ltd All rights reserved 47 InstallShield Wizard xl Welcome Modifu repair or remove the program BL SS Welcome to the DNASIS MAX V2 5 Setup Maintenance program This program lets you modify the current installation Click one of the options below C Modify Select new program components to add or select currently installed components to remove Repair ff Reinstall all program components installed by the previous setup Remove F3 Remove all installed components lt Back bel Cancel The dialog shown below will be displayed Click the OK button Confirm File Deletion X Do you want to completely remove the selected application and all of its components Click the Finish button for InstallShield Wizard to finish the uninstallation procedure 4 3 2 MSDE2000 From Add Remove Programs choose Microsoft SQL Server Desktop Engine DNASIS and click the Remove button jj Microsoft SQL Server Desktop Engine DNASIS Remove The dialog below will be displayed Click the Yes button Add Remove Programs B xi pu lt 9 Are you sure you want to remove Microsoft SQL Server Desktop Engine DNASIS From your computer 4 3 3 ContigManager From Add Remove Programs choose DNASIS MAX ContigManager and click the Change Remove button 2004 Hitachi Software Engineering Co Ltd
30. er Custom r Description InstallShield Back Cancel If you choose Custom you may select the databases to install If you choose Typical all databases that are registered Sequence DB has 2 Blast DB has 13 will be installed If you choose Custom click the Next button for the following dialog Put check marks next to those components you want to install and then click the Next button to start the installation If you choose Typical click the Next button to continue the dialog will not be displayed InstallShield Wizard 4 xl Select Components Choose the components Setup will install a e Select the components you want to install and clear the components you do not want to install Description BCT Sequence database for blast iz MAM search PHG MPIR vj UniGene At vj UniGene Cel M UniGene Cre vj UniGene Dm iwi UniGene Os xz Space Required on C 1065644 K Space Available on C 209924 K InstallShield teen Once installation is complete a dialog will be displayed so click the Finish button to exit the installer 62004 Hitachi Software Engineering Co Ltd All rights reserved 15 InstallShield Wizard InstallShield Wizard Complete Setup has finished installing sample database for DNASIS MAX on your computer 1 5 Installing the Phred Phrap Option For those customers with the Phred Phrap option only Note Administrative
31. ff Reinstall all program components installed by the previous setup Le Remove E Remove all installed components The dialog shown below will be displayed Click the OK button Confirm File Deletion B xi Do you want to completely remove the selected application and all of its components Cancel Click the Finish button for InstallShield Wizard to finish the uninstallation procedure 2004 Hitachi Software Engineering Co Ltd All rights reserved 21 2 3 Installing DNASIS MAX V2 5 Note Administrative privileges are required for this installation Insert the DNASIS MAX installer CD into the CD drive The installation screen will launch automatically Note If the screen does not launch automatically double click the My Computer icon Mv Computer Double click the Compact Disc icon to open the drive File Edit View Favorites Tools Help Back gt search Folders Ug GE X A E Address fe My Computer j Go FE a P i D5 ye Local Disk C DNASISMAX Vv dontrol Panel 315 Floppy a 2554 D Select an item to view its description ini xl z n Folders US Ui x A EJ v Go ContigMana DNASIS DNASIS MSDE2000 for Update DNASIS Autorun inf dnasis max Install ico Setup exe The installer dialog shown below will be displayed 62004 Hitachi Software Engineering Co Ltd All rights reserved 22
32. ftware packaging Your DNASIS MAX software includes a unique validation code and your regional support center will only generate a single key code per validation code The key code is only valid for a given machine ID This means for each copy of DNASIS MAX you purchase you can only run that copy of DNASIS MAX on a single computer This machine ID will change if you upgrade or reinstall your operating system and you will require a new key code to unlock the DNASIS Should your computer become damaged and you need to reinstall the DNASIS you will need to contact your regional support center See Appendix A and apply to have the key code for your copy of DNASIS reissued 2004 Hitachi Software Engineering Co Ltd All rights reserved 30 2 Setting the Key Code Input the key code sent from your regional support center in the Key Code field in the Unlock Product dialog and click the OK button When the lock icon disappears in DNASIS Key Code Manager then the key code has been set and DNASIS MAX may be launched y Copyright C 2003 Hitachi Software Endincerigg Gp i lima Ivan DNASIS MAX V2 5 Phred Phrap Option Note This Key Code field is case sensitive Be sure to select the correct case for each letter when entering the key code 2 8 2 Setting Key Codes for the Phred Phrap Option Note Administrative privileges are required for this installation DNASIS MAX offers support for the Phred Phrap o
33. k the Finish button to exit the installer 62004 Hitachi Software Engineering Co Ltd All rights reserved 38 InstallShield Wizard InstallShield Wizard Complete Setup has finished installing sample database for DNASIS MAX on your computer 3 5 Installing the Phred Phrap Option For those customers with the Phred Phrap option only Note Administrative privileges are required for this installation Please note Before installing the Phred Phrap option launch DNASIS MAX once If you do not launch DNASIS MAX at least once before installing the Phred Phrap option the Phred Phrap feature may not be operational Insert the Phred Phrap Option Installation CD into the CD drive to start the installation process Note If the screen does not launch automatically double click the My Computer icon double click on the Compact Disc icon double click Setup exe and start the installation procedure DNASIS Key Code Manager will launch so click the OK button and close the dialog 3 6 Setting Key Codes To use DNASIS MAX and its optional features a key code is required Please obtain and set up the key code before using the product The key code needs to be set up only once during the initialization procedure Once set the key code does not need to be reentered 3 6 1 Setting Key Codes for DNASIS MAX 1 Obtaining a Machine ID and the Key Code Choose Start gt Programs gt DNASIS MAX gt Ke
34. lease UNINSTALL DNASIS MAX V1 0 First When the installation is complete the IDNASIS Kev Code Manager dialog used for setting up the kev code will be displaved Note that IDNASIS Kev Code Manager mav actuallv be displaved in the background of the installer dialog Note that when DNASIS MAX V2 5 is installed the Phred Phrap Option will still display the version as V2 0 but this does not affect product functionality 62004 Hitachi Software Engineering Co Ltd All rights reserved 10 DNASIS Key Code Manager E E MA Copyright C 2003 Hitachi Software Endincerigg Co Re il DNASIS MAX li Phred Phrap Option Click the OK button and close the DNASIS Key Code Manager dialog Now install MSDE2000 following the instructions in the section below 1 2 Installing MSDE2000 MSDE2000 is a database engine from Microsoft Corporation and is required for using ContigManager Please refer to Section 1 3 Installing ContigManager for more information Once DNASIS MAX V2 5 is installed the MSDE2000 Install button is activated If a version prior to MSDE2000 SP3 is already installed the message below will be displayed Question S A MSDE 2000 Service Pack 3 is not installed Install MSDE 2000 Service Pack 37 w If you choose No and cancel the installation ContigManager will not be installable If MSDE2000 SP3 is already installed the Install button will not be activated Please skip this section and m
35. mponents to add or select currently installed components to remove Repair ed Reinstall all program components installed by the previous setup Remove F3 Remove all installed components lt Back Lew Cancel The dialog shown below will be displayed Click the OK button Confirm File Deletion ME xi Do vou want to completelv remove the selected application and all of its components7 Click the Finish button for InstallShield Wizard to finish the uninstallation procedure 4 44 Uninstalling a DNASIS MAX V2 0 to V2 5 Update 4 4 1 DNASIS MAX V2 5 Note Administrative privileges are required for this uninstallation Exit any programs related to DNASIS MAX including ContigManager DNASpace and DNASpace Scheduler From Add Remove Programs choose DNASIS MAX Updates 2 5 and click the Change Remove button ber DNASIS MAX Updates 2 5 Change Remove The dialog shown below will be displayed Click the OK button x Do you want to completely remove the selected application and all of its components 2004 Hitachi Software Engineering Co Ltd All rights reserved 50 Click the Finish button for InstallShield Wizard to finish the uninstallation procedure 4 4 DNASIS MAX V2 0 If you have installed the patches for DNASIS Max V2 0 IDNASIS MAX Updates for V2 1 1 and DNASIS MAX Updates 2 1 1 you will want to remove those first From Add Remove Programs choose DNASIS
36. ms choose DNASIS MAX Updates 2 1 1 and click the Change Remove button e DNASIS MAX Updates 2 1 1 Change Remove From Add Remove Programs choose DNASIS MAX V2 0 and then click the Change Remove button ifa DNASIS MAX V2 0 Change Remove The dialog shown below will be displayed Choose the Remove toggle button and click the Next button 62004 Hitachi Software Engineering Co Ltd All rights reserved 45 InstallShield Wizard x Welcome Modify repair or remove the program D Welcome to the DNASIS MAX V2 0 Setup Maintenance program This program lets you modify the current installation Click one of the options below C Modify Select new program components to add or select currently installed components to remove C Repair ff Reinstall all program components installed by the previous setup Remove Remove all installed components lt Back e Cancel The dialog below will be displayed so click the OK button Confirm File Deletion xj Do you want to completely remove the selected application and all of its components Click the Finish button for InstallShield Wizard to finish the uninstallation procedure 4 2 2 MSDE2000 From Add Remove Programs choose Microsoft SQL Server Desktop Engine DNASIS and click the Remove button jj Microsoft SQL Server Desktop Engine DNASIS Remove The dialog shown below will be displayed Click th
37. n only Refer to Section 2 7 Installing the Phred Phrap Option Request that a key code be issued See the Licensing Instructions included with your software Receive a key code from your regional support center See Appendix A User Support Contact Information Set the key code Please refer to sections 2 8 1 2 Setting the Key Code and Section 2 8 2 Setting the Key Code for the Phred Phrap Option DNASIS MAX V2 5 is ready to be accessed and used 2004 Hitachi Software Engineering Co Ltd All rights reserved 3 Upgrading from DNASIS MAX V2 0 to DNASIS MAX V2 5 Install DNASIS MAX V2 5 Please refer to Section 3 1 Installing DNASIS MAX V2 5 Install MSDE2000 Refer to Section 3 2 Installing MSDE2000 Install ContigManager Refer to Section 3 3 Installing ContigManager Install the SampleDB Refer to Section 3 4 Installing SampleDB Install the Phred Phrap option This is for customers with the Phred Phrap option only Refer to Section 3 5 Installing the Phred Phrap Option Request that a key code be issued See the Licensing Instructions included with your software Receive a key code from your regional support center See Appendix A User Support Contact Information Set the key code Please refer to Section 3 6 1 2 Setting the Key Code and Section 3 6 2 Setting the Key Code for the Phred Phrap Option DNASIS MAX V2 5 is ready to
38. ntigManager 2 Installing ContigManager Note Administrative privileges are required for this installation Once MSDE2000 is installed the Install button for ContigManager for DNASIS Installer will become activated Click the Install button for ContigManager for DNASIS Installer to begin installing ContigManager J DNASIS Installer XI gt DNASIS MAX V2 5 Install r MSDE2000 for DNASIS Installer Install DNASIS MAX before you run this installation program E r ContigM anager for DNASIS Installer Install DNASIS and MSDE 2000 before you run this installation Close Dialog A dialog will be displayed when the installation is completed Click the Finish button to end the installer Refer to the following section to install the SampleDB 2 6 Installing SampleDB To conduct the tutorial included in the DNASIS MAX User s Manual installing SampleDB is required Be sure to first install ContigManager then install SampleDB 2 6 1 Whatis SampleDB SampleDB refers to the sample database for use with DNASIS MAX It is comprised of SequenceDB and BlastDB SequenceDB stores DNA and Amino Acid sequences you can use Sequence DB Manager to display and edit sequences It is also used for Smith Waterman searches The Blast DB is a database reserved for Blast searches and is used for local Blast searches 62004 Hitachi Software Engineering Co Ltd All rights reserved 25 in DNASI
39. ove forward to Section 1 3 Installing ContigManager Click the Install button for IMSDE2000 for DNASIS Installer and install MSDE2000 The installation will take more than five minutes A message asking you to wait until the installation is complete will be displayed Click the OK button to start the installation Setur s A This process may take a very long time more than five minutes even though the progress bar is completed Please WAIT until the installing is Finished 2004 Hitachi Software Engineering Co Ltd All rights reserved 11 Once the MSDE2000 installation is complete you will need to restart your PC If you do not reboot after the MSDE2000 installation ContigManager will not install correctly After restarting double click Setup exe from the DNASIS MAX installation CD Now refer to the section below to install ContigManager 1 3 Installing ContigManager Note Administrative privileges are required for this installation After installing MSDE2000 the Install button for ContigManager for DNASIS Installer will be activated Click the Install button for ContigManager for DNASIS Installer to install ContigManager A dialog will be displayed announcing the completion of the installation so click the Finish button to exit and close the installer Now refer to the section below to install SampleDB 1 4 Installing SampleDB To conduct the tutorial included in the DNASIS MAX User
40. privileges are required for this installation Please note Before installing the Phred Phrap option launch DNASIS MAX once If you do not launch DNASIS MAX at least once before installing the Phred Phrap option the Phred Phrap feature may not function correctly Insert the Phred Phrap Option Installation CD into the CD drive to start the installation process Note If the screen does not launch automatically double click the My Computer icon double click on the Compact Disc icon double click Setup exe and start the installation procedure DNASIS Key Code Manager will launch so click the OK button and close the dialog 1 6 Setting Key Codes To use DNASIS MAX and its optional features a key code is required Please obtain and set up the key code before using the product The key code needs to be set up only once during the initialization procedure Once set the key code does not need to be reentered 1 6 1 Setting Key Codes for DNASIS MAX 1 Obtaining a Machine ID and the Key Code Choose Start gt Programs gt DNASIS MAX gt Key Code Manager and launch DNASIS Key Code Manager Click the Unlock button 62004 Hitachi Software Engineering Co Ltd All rights reserved 16 DNASIS Key Code Manager ET i Copyright C 2003 Hitachi Software Be URN 2 Product Version l tl DNASIS MAX m Phred Phrap Option The Unlock Product dialog will be displayed the Machine ID is displayed in the cen
41. ption Once DNASIS MAX is installed you will need to input a key code to access this feature Display the DNASIS Key Code Manager dialog as in the steps outlined above Choose the Phred Phrap Option and click the Unlock button Unlock Product Product Key JPhred Phrap Option V2 0 Machine ID OOOO Key Code ji Cancel The Unlock Product dialog will be displayed Make sure that the Product Key field is set to Phred Phrap Option V2 0 Enter the key code you obtained for the Phred Phrap option and click the OK button If the lock icon to the left of the Phred Phrap Option field disappears in DNASIS Key Code Manager then the Phred Phrap option has been enabled and may be used 62004 Hitachi Software Engineering Co Ltd All rights reserved 31 DNAS f Copyright C 2003 Hitachi Software Endineerigd Gp b i Product 1 vesi 2004 Hitachi Software Engineering Co Ltd All rights reserved 32 Chapter 3 Upgrading from DNASIS MAX V2 0 to V2 5 3 1 Installing DNASIS MAX V2 5 Note Administrative privileges are required for this installation Exit any programs related to DNASIS MAX including ContigManager DNASpace and DNASpace Scheduler Insert the DNASIS MAX Installer CD into the CD drive The installation screen will launch automatically Note If the screen does not launch automatically double click the My Computer icon NH S My Computer Double click the
42. s Manual installing SampleDB is required Be sure to first install ContigManager then install SampleDB 1 4 1 What is SampleDB SampleDB refers to the sample database for use with DNASIS MAX It is comprised of SequenceDB and BlastDB SequenceDB stores DNA and Amino Acid sequences you can use Sequence DB Manager to display and edit sequences It is also used for Smith Waterman searches The BlastDB is a database reserved for Blast searches and is used for local Blast searches in DNASIS MAX 1 4 2 Installation Insert the SampleDB Installation CD into the CD drive The installer screen will launch automatically Note If the screen does not launch automatically double click the My Computer icon My Computer Double click the Compact Disc icon to open the drive 2004 Hitachi Software Engineering Co Ltd All rights reserved 12 iBix File Edit View Favorites Tools Help Back fey Qisearch Gyroders 8 m IE X A Eee Address a My Computer PN gt Go 4a LI My Computer 31 Floppy A Select an item to view its description sl 4 object s g My Computer pA Double click Setup exe file and display the installer dialog MM tI Help G4 Folders BIEB x ala o dew a o WwW 8 Autorun inf data1 cab data1 hdr data2 cab Hi a W ikernel ex Install ico layout bin setup bmp g g i R Setup exe Setup ini setup inx Th
43. s removed We recommend that you back up those databases that you have modified and added to The procedure is as follows 1 Move to the folder where the database is stored 2 If installed according to initial default values from My Computer choose Local Disc C and open the HSK DB folder 3 Copy the database file contained in the file to another folder and perform backup DNASIS MAX Database Storage Folder AAMotifDB BlastDB GenomeDB NAMoitfDB MultipleAlignmentProfile SequenceDB Reconstructing Data After installing DNASIS MAX V2 5 copy the backup file to the folder with the corresponding database 2 1 2 Vector Data Backup To backup Vector data use the Vector Database Manager from DNASIS MAX 1 Launch DNASpace and choose the option Vector Database Manager from the Database menu 2 The Vector Database Manager will launch 3 Choose the vector data to backup and click the Export button to save it in a separate folder Reconstructing Data After installing DNASIS MAX V2 5 launch Vector Database Manager and click the Import button to import the backup file 2 1 3 Space Backup For those customers with the DNASpace option only When DNASIS MAX V1 0 is removed any custom Space that you created will also be removed We recommend that you back up those Spaces that you have created The procedure is as follows Launch DNASpace Choose File then Dpen Space
44. ter row Product Key oasis MAX V2 5 Machine ID IXXXX XXXX XXEX Key Code ji Cancel Note that the Machine ID is unique for each PC To obtain a key code please refer to the Licensing Instructions included in the software packaging Your DNASIS MAX software includes a unique validation code and your regional support center will only generate a single key code per validation code The key code is only valid for a given machine ID This means for each copy of DNASIS MAX you purchase you can only run that copy of DNASIS MAX on a single computer This machine ID will change if you upgrade or reinstall your operating system and you will require a new key code to unlock the DNASIS Should your computer become damaged and you need to reinstall the DNASIS you will need to contact your regional support center See Appendix A and apply to have the key code for your copy of DNASIS reissued 2 Setting the Key Code Note Administrative privileges are required for setting the key code Input the key code sent from your regional support center in the Key Code field in the Unlock Product dialog and click the OK button When the lock i icon disappears in DNASIS Key Code Manager then the key code has been set and DNASIS MAX may be launched 2004 Hitachi Software Engineering Co Ltd All rights reserved 17 DNASIS Key Code Manager LJ DNASIS MAX v2 5 i Phred Phrap Option Note This Key
45. tion nn 29 2 8 SettingiKey Code Siit e e eee e n e d ben 29 2 8 1 Setting Key Codes for DNASIS MAX 30 1 Obtaining a machine ID and the Key Code sen 30 2 Setting the Key Code sr a 31 2 8 2 Setting Key Codes for the Phred Phrap Option 31 Chapter3 Upgrading from DNASIS MAX V2 0 to V2 5 33 3 1 installing DNASIS MAX V2 b o cse hisce aene no A coc cra c tetro 33 3 2 Installing MSDE2000 nn nn nn r ann nn r ener nene rennen 34 3 3 Installing ContigManager nanna nn 35 3 4 Installing SampleDB rr rrr g o ap A G 35 3 4 1 Whatis SampleDB eret ee e b tege teta ep a ede 35 3 4 2 Installation EE RC iet tte tratte terit ek 35 3 5 Installing the Phred Phrap Option 39 3 6 Setting Key Codes ettet ttt Benet eter Dent Cent Uere err ert e bo rent 39 3 6 1 Setting Key Codes for DNASIS MAX 39 1 Obtaining a Machine ID and the Key Code en 39 2 Setting the Key Code nanna terene 40 3 6 2 Setting Key Codes for the Phred Phrap Option ss 41 Chapter4 Uninstalling DNASIS MAX ssstt ettet 43 4 1 Uninstalling DNASIS MAX V1 0 tette 43 4 1 1 DNASIS MAX V1 0 Baektposs aeui ep ect edes eie cei eec 43 13 Database Backup ii 9i e e Due Mio de sata 43 2 Vector Data BACKUP rrr erp vente kwa err pers te perta 43 3 Space Backup cep eaaet tn eerte tri reves 43 2004 Hitachi Software Engineering Co Ltd All rights reserved 7 4 1 2 4 2 4 2 1 4 2 2 4 2 3 4 2 4 4 3 4 3 1 4
46. upport center in the Key Code field in the Unlock Product dialog and click the OK button When the lock i icon disappears in DNASIS Key Code Manager then the key code has been set and DNASIS MAX may be launched 2004 Hitachi Software Engineering Co Ltd All rights reserved 40 DNASIS Kev Code Manager LI DNASIS MAX V2 5 i Phred Phrap Option Note This Key Code field is case sensitive Be sure to select the correct case for each letter when entering the key code 3 6 2 Setting Key Codes for the Phred Phrap Option Note Administrative privileges are required for this installation DNASIS MAX offers support for the Phred Phrap option Once DNASIS MAX is installed you will need to input a key code to access this feature Display the DNASIS Key Code Manager dialog as in the steps outlined above Choose the Phred Phrap Option and click the Unlock button The Unlock Product dialog will be displayed Make sure that the Product Key field is set to Phred Phrap Option V2 0 Unlock Product Product Key Phred Phrap OptionV20 x MachnelD D960cX090C30 CS Key Code KE Cancel Enter the key code you obtained for the Phred Phrap option and click the OK button If the lock icon to the left of the Phred Phrap Option field disappears in DNASIS Key Code Manager then the Phred Phrap option has been enabled and may be used 62004 Hitachi Software Engineering Co Ltd All rights reserv
47. y Code Manager and launch DNASIS Key Code Manager Click the Unlock button 62004 Hitachi Software Engineering Co Ltd All rights reserved 39 DNASIS Key Code Manager ET i Copyright C 2003 Hitachi Software Be URN 2 Product Version l tl DNASIS MAX m Phred Phrap Option The Unlock Product dialog will be displayed the Machine ID is displayed in the center row Product Key oasis MAX V2 5 Machine ID IXXXX XXXX XXEX Key Code ji Cancel Note that the Machine ID is unique per each PC To obtain a key code please refer to the Licensing Instructions included in the software packaging Your DNASIS MAX software includes a unique validation code and your regional support center will only generate a single key code per validation code The key code is only valid for a given machine ID This means for each copy of DNASIS amp MAX you purchase you can only run that copy of DNASIS MAX on a single computer This machine ID will change if you upgrade or reinstall your operating system and you will require a new key code to unlock the DNASIS Should your computer become damaged and you need to reinstall the DNASIS you will need to contact your regional support center See Appendix A and apply to have the key code for your copy of DNASIS reissued 2 Setting the Key Code Note Administrative privileges are required for setting the key code Input the key code sent from your regional s

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