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1. What s New in User Release 2 0 Herschel Data Processing 1 Summary e Documentation e New manual Read Me First e New manual Quick Start Guide e New manual HIPE Owner s Guide e The HowTo Documents have been renamed Data Analysis Guide and now include material previously found in the Advanced User s Manual e The Advanced User s Manual has been renamed Scripting and Data Mining and its contents have been reorganised e New documentation categories e URM categorised view now includes descriptions e Developer documentation for modules now reachable from Help system TOC e Updates to instrument guides See Section 2 for more information e HIPE Herschel Interactive Processing Environment HIPE new functionality added for user release 2 0 with respect to user release 1 2 e Tip of the day e Enhancements in Jython and text editors e Preferences links e Opened editors are re opened the next session e HIPE title shows version and selected editor e Perspectives can be reset to their default layout e Source code of Java tasks e Multiple selection in the navigator view e Non blocking opening of FITS files e Displaying meta data with different formats e Refresh of viewers when data changes e More log messages e Run and stop buttons always present What s New in User Release 2 0 e Quick clean of variables e Bugfixes See Section 3 for more information TablePlotter and OverPlotter In this version we
2. e A new function to de correct aberration from product data has been implemented See Section 21 for more information User Installer More comprehensive and intuitive error handing mechanism What s New in User Release 2 0 See Section 22 for more information e HIFI OTF mapping First version of a customized easier GUI for the DoGridding task GriddingTask can work with one or a number of SpectrumContainers i e with Spectrum1d Spectrum2d HifiSpectrumDatasets and SpectralSimpleCubes Gridding tasks avoid extrapolating data outside the borders of the map Coordinates of reference pixel can be specified full control of the location of the area to be regridded An input WCS can be provided to perform the projection or rotate the result map Output cube of weights together with the usual cube of flux intensities Cubes can have ImageIndex for input spectra with irregular frequency spacing Enhanced output table detailing the convolution process to keep track of the spectra contributing to each pixel Cubes get an ImageIndex array of wave values when the input datasets are not regularly spaced Gridding tasks inform of their process and they can be interrumpted Better handling of exceptions Fixed many minor issues see Section 23 for more information e DoGridding basic and expert GUI including combos for filter type and weight mode e More flexible selection of input datasets Choose the location of the regular grid reference pixel an
3. Categorized view of Commands sections in each User Reference Manual now show descriptions for each task and command listed Developer documentation for modules now reachable from Help system TOC Package level developer documentation which was previously reachable following a tortuous path via the Javadoc is now directly accessible from the table of contents of the HIPE Help System Updates to instrument guides Instrument teams have been working hard to update their documentation to the latest features of their software 3 HIPE The following list informs about changes in the HIPE framework Therefore it doesn t include improvements in particular views like the Data Access perspective image viewers ICC particular tools etc For more information about them please consult their own specific packages New functionality available e Tip of the day HIPE opens a typical Tip of the day dialog with useful advices and tricks Whether it is opened or not at start up is easily configured by just clicking on a check box This window is also available through the Help menu e Enhancements in Jython and text editors What s New in User Release 2 0 Script and text editors provide new useful functionality e Highlighting colors whether to activate it is now configurable through preferences e Syntax highlighting recognizes multiline strings triple quotes e Size of tab number of characters can be customized e Text edito
4. New in User Release 2 0 HCSS 2093 Image axis tick selection inappropriate PACS 1646 PACS EDP 6 Image viewer should auto scale to tab size HCSS 8362 Display unable to open RGB images HCSS 8339 ia_gui_image relocate graphic and plot preferences HCSS 8234 RotateTask unable to rotate images that contain error and coverage HCSS 8192 Display send exceptions on simplecube and images with ERROR and FLag Fix for HCSS 8094 Images are displayed upside down 9 Source extractor New features available New tasks sourceExtractorSussextractor and sourceExtractorDaophot Each algorithm now has its own task to simplify the interface The sourceExtractor task still functions as before for backwards compatibility Jy beam maps are now accepted as inputs with the beamArea specified The beamArea task parameter allows the extent of the beam to be provided in square arcsec It is recommended to use a Gaussian approximation for this to accompany the default Gaussian approximation for the point response function FWHM provided by the fwhm task parameter DAOPHOT as well as SUSSEXtractor provides source positions to sub pixel accuracy with uncertainties Uncertainties are estimated from the signal to noise ratio DAOPHOT as well as SUSSEXtractor provides uncertainties in the flux measurements Uncertainties are estimated from the signal to noise ratio which is derived from the significance of the detection in the DAOPHO
5. be previously computed with DoPointingTask No pointing siam auxiliary products are accepted any more HIFI 2924 flux unit and description set in the result cubes HIFI 2906 hifiGriddingTask does not need science type of datasets as user input e HIFI 2845 spectra do not have correct sky frequency in LSB of cubes e Cubes get an ImageIndex array of wave values when the input datasets are not regularly spaced When the input spectra have not been regridded along the frequency axis i e the channel separation is not constant an ImageIndex is created to specify the frequency of each layer image of the cube 24 SPIRE e Calibration Framework The calibration products have been removed from the build e The Callmport class has a partially revised API containing some new methods and the ability to select URLs as well as file names e For backward compatibility the cal_import command with no arguments will continue to work as long as the user is on line it now downloads the data over the internet rather than reading it from the build e Spectrometer Pipeline e Spectrometer pipelines are now able to merge like building blocks for long observations e Browse product image that is created by the spectrometer pipelines shows the spectra for the central detectors of each array Pointing information is now computed using the Beam Steering Mirror Timeline e A function that corrects detector samples that have been clipped has been added
6. dataset or a number of them Possibility to provide specify a WCS for the cubes and to perform the projection By default the OTF mapping performs a GLS projection of the spectra coordinates into a flat map However the user may provide an input WCS to perform such projection In such case the pixel coordinates of each input spectra are computed with the given WCS In addition the spatial parameters of the input WCS is copied to the output cubes additional parameters are added to 16 What s New in User Release 2 0 describe the wave frequency axis of the cube This allows also to rotate the result cube by using an input WCS with certain rotation angle e Flux unit and description is set in the result cubes fix SPR HIFI 2924 Now the result cubes include units and description of the flux data e HCSS compliant header in cubes metadata Now the metadata of the cubes created with the gridding cubes is complete according to the specification for Herschel products No standard parameter is missing e Other minor problems fixed Namely the following SPR s have been fixed e HIFI 2098 gridding task should not use dummy pointing products if they are not supplied e HIFI 2101 the available weighting options should be in a drop down menu rather that hand entered HIFI 2098 gridding task should not use dummy pointing products if they are not supplied e HIFI 2949 remove old inputs from DoCube and DoGridding task Now positions have to
7. deprecated code Fixed problem when crpix3 is a long and not a double HCSS 8371 Broken doc link in both JAVA Doc and Software Documentation HCSS 7936 SimpleImage removes coverage and exposure maps HCSS 8147 SimpleImage setImage should fail with an exception rather than a warning in the log HCSS 8100 WCS isValidQ fail for WCS with CDELT2 equal zero 8 Image display New features changes Corrected deprecated code HCSS 6340 Image viewer not offered with SPIRE level2 image datasets HCSS 8745 Scan Map Level 2 products image error coverage datasets cannot be viewed as an image HCSS 8344 add wave value to the coordinates in the status bar of the Display showing a Cube HCSS 2093 Image axis tick selection inappropriate adding missing ticks Part 3 Fixed problem with autoscaling of layers in HIPE HCSS 8694 Popup shown when executing normal valid code HCSS 2093 Image axis tick selection inappropriate adding missing ticks HCSS 8466 size of flux cell in Display is too small HCSS 6340 Image viewer not offered with SPIRE level2 image datasets Part 1 HCSS 8462 Display zoomWorldCoordinates double double float seems to work wrongly upside down HCSS 8584 DPAT2 include a middle button roll zoom in Image Viewer HCSS 5909 DPAT 1 ImageDisplay should allow to copy coordinate of current cursor position part 1 HCSS 1308 The tick spacing and tick labeling of the axis should be manually adjustable 10 What s
8. to the spectrometer pipelines What s New in User Release 2 0 e The default algorithm for the Baseline Correction function has been changed from a polynomial fit to a low frequency Fourier fit
9. S 6235 was implemented When the overlay feature is used in TablePlotter the y axis is adjusted according to the data in each layer The layer who has the biggest ydata is referred HCSS 6236 was implemented The icon which shows the current corrdinates now is available in each plot throughout the colum y axis row x axis selectors It provides a handy tool to see the current coordinate values HCSS 6238 was implemented The OverPlotter has a new tab name OPL and the TablePlotter has a new name TPL datasetname HCSS 6795 was implemented All layer free scale which bounded to the old buggy PlotXY library works fine with the current PlotXY pacakge HCSS 7593 The usage on Configuration class is completely removed from ia_gui_explorer It no longer causes any changes in the configuration What s New in User Release 2 0 HCSS 8430 A new hipe prefrence is introduced in this release Users can open Edit Preference in hipe to change reset the zoom and pan factors HCSS 8356 ia_gui_explorer now uses the new axis locking class AxisGroup to lock and unlock single or group of axes The deprecated locking methods from PlotXY are removed HCSS 8637 The Preference button in the previous version is renamed as Layer Props It is used to set preferences for layer only The dialog to set pan zoom factors is deleted HCSS 6866 ia_gui_explorer no longer sets the major and minor tickmarks Instead the tickmarks will be
10. T H filtered image Input source lists positions of known sources are no longer filtered during extraction Previously SUSSEXtractor was altering the positions and DAOPHOT was applying roundness and sharpness filters to remove certain sources Additionally the input source list is not now re sorted during extraction Priors on flux and background are now accepted as optional input parameters for SUSSEXtractor Default values are provided for the flux priors If no background priors are provided these are estimated from the image itself Better detection of local maxima Spurious detections near the edges of the images are now greatly reduced Default local maximum search radius pixelRegion is now set to 1 5 pixels I e a pixel is considered to be a local maximum if it is greater in value that all of its 8 immediate neighbours ignoring bad pixels Improved default size of PRF Based on input FWHM See log message when task is executed Logging messages What s New in User Release 2 0 These have been tidied up e Weight map A bug has been corrected so that SUSSEXtractor now handles the error map correctly e Thresholding in SUSSEXtractor The implicit log evidence threshold has been removed for when SUSSEXtractor is used in signal to noise mode 10 Plot e New Axis types Two new axis types are added RIGHT_ASCENSION and DECLINATION e Mouse behaviours improvements Mouse behaviour binding is configurable in HIPE prefer
11. al introduces you to HIPE documentation and describes what other guides are available e New manual Quick Start Guide This manual gets you started using HIPE with the minimum of fuss confusion time wasted and helpdesk tickets raised e New manual HIPE Owner s Guide This guide introduces you to the general features of HIPE such as perspectives and views It is mainly drawn from chapter 2 and 17 of the old HowTo Documents Introduction to HIPE and How to Save Play Back Scripts in HIPE The HowTo Documents are now called Data Analysis Guide The Data Analysis Guide includes much of the old HowTo Documents plus corresponding parts of the old Advanced User s Manual For instance plotting is now described in a single chapter instead of being split between two manuals Each chapter has How To and In Depth sections which roughly map the old subdivision between the two manuals The Advanced User s Manual is now called Scripting and Data Mining The User s Manual has been for a long time the manual on Data Processing software Its role has progressively changed towards describing more advanced features with an emphasis on low level data structures and command line interaction The new title and content organisation reflect this new role e New documentation categories The table of contents of the HIPE Help System now organises manuals into more meaningful categories e URM categorised view now includes descriptions The
12. ally setting the ticks is more intelligent now More preferences to set the axes automatically e Using the middle button moouse wheel you can zoom in and out on the image e The status bar of the Display is now split in two lines Extra information is the wave value in case Display shows a cube You can change from the image view to the error coverage exposure flag view See Section 8 for more information Spectrum fitter A whole new implementation of the SpectrumFitter has been made This is called ExplrFitter in the HIPE applications list This new implementation uses the SpectrumExplorer for its visualisation It supersedes SFTool and SFTask In fact those two are no longer available Source extractor The most significant changes are listed here e New tasks sourceExtractorSussextractor and sourceExtractorDaophot e Jy beam maps are now accepted as inputs with the beamArea specified e DAOPHOT as well as SUSSEXtractor provides source positions to sub pixel accuracy with uncertainties e DAOPHOT as well as SUSSEXtractor provides uncertainties in the flux measurements e Input source lists positions of known sources are no longer filtered during extraction e Priors on flux and background are now accepted as optional input parameters for SUSSEXtractor See Section 9 for more information Plot New features and other improvments See Section 10 for more information Data input output e New FITS keywords added e FitsAr
13. at s New in User Release 2 0 PointingUtils correctAberration PointingArray pt Long fineTimes OrbitEphemerisProduct e This function avoids using Ephemeris 22 User Installer A more comprehensive and intuitive error handing mechanism has been added to the User Installer The User Installer in case of an error in the underlying developer intaller receives a report from it writes in the log informs the user and aborts the installation This will help us give more comprehensive support to our user community 23 HIFI OTF mapping List of new features available and problems fixed in this release e Customized easier GUI for DoGridding task The DoGridding task offers a GUI where one can use combos to select the type of filter and the mode to assign weights In addition the GUI offers a basic expert button to toggle between a list of parameters used more often and another one of those used less frequently e GriddingTask to make cubes from SpectrumContainer SpectrumContainerBox or collection of SpectrumContainers The DoGridding task is available to work with products of type HifiTimelineProduct the main product of the HIFI pipeline But in addition a task is offered which accepts more generic inputs This is called GriddingTask It can accept any container able to behave as an SpectrumContainer This means that the GriddingTask can accept Spectrumld datasets Spectrum2d HifiSpectrumDatasets and even SpectralSimpl
14. chive provides save methods for working with File and OutputStream See Section 11 for more information Datasets e Dataset implements java util Map interface See Section 12 for more information Array toolbox e New REPEAT functionality added See Section 13 for more information What s New in User Release 2 0 Product Access Layer PAL query interruptible local store storage support gzip and thread safety improvement e PAL query interruptible e Local store support storing gzipped products e Thread safety improvement See Section 14 for more information Calibration Sources Database e Switch from custom protocol to HTTP e Improvements to documentation e GUI improvements See Section 15 for more information Virtual Observatory e VO table import export e Support for all applications on the External Tools page See Section 16 for more information QualityContext and QCR Browser New improvements on the QCR Browser including a better graphical user interface and providing more info See Section 17 for more information Product Generation RA amp DEC protection againts hang ups new OC metadata and better user functionality See Section 18 for more information Bulk reprocessing tool Major upgrade of the bulk reprocessing utility tool See Section 19 for more information Task framework e Tasks now provide a log message with the full invocation See Section 20 for more information Auxiliary Products
15. custom quality flags 18 Product Generation New improvements are e New averaged RA and DEC algorithm e Better protection againts locking problems e New compulsory metadata e Manual start up of the automatic processing e Import of observations form a file e Properties 19 Bulk reprocessing tool Major upgrade of the bulk reprocessing utility tool e Bulk reprocessing based on a list of observations e Enable disable OD processing for the ods containing the previous list of observations e Filtering capabilities Retrieve a list of obsid for bulk reprocessing from a query to the HSA the syntax must be the PAL one e g p meta odNumber 121 Filtering capabilities Retrieve a list of observations based on an external file with observation ids e Suspend Resume Stop the jobs no need to wait for the completion of the OD e Information about planned jobs and active jobs e The GUI reports e Job id for every pipeline running e Processing time for each pipeline 20 Task framework New features available e Tasks now provide a log message with the full invocation Tasks now print a message with the full call showing all parameters passed including optionals with defaults Example INFO Full Call restore file home jadiaz hipe session variables ser mandatory 21 Auxiliary Products e A new function to de correct aberration from product data has been implemented The new function s signature is PointingArray Wh
16. d its coordinates Optional WCS input to perform the projection and for the result cubes e Output cube weights e Avoid extrapolating data outside the borders of the map e Convolution table keep track of the contributions to each pixel provide more details about the regular grid about the filter function and about the shape of the regular grid e Cubes get an ImageIndex array of wave values when the input datasets are not regularly spaced along the frequency axis e Gridding tasks inform of their process and they can be interrumpted Better handling of exceptions See Section 23 for more information e SPIRE Updates in the calibration framework and in the spectrometer pipeline See Section 24 for more information 2 Documentation The documentation has been reorganised to make it better suited to the current status of the Herschel Data Processing software During the past few years the software has grown a lot many new features have been added and GUIs are now available where previously the command line was the only option Our two main manuals the User s Manual and the HowTos grew by incremental updates and developed duplication and inconsistencies while some sections sometimes entire chapters went slowly stale The following updates try to address these deficiencies This is the first release with the new structure so expect a few hiccups New manual Read Me First What s New in User Release 2 0 This manu
17. de the observed area is based on checking the global weight computed for each pixel by the convolution These pixels get a very low accumulated weight compared to pixels inside the map Hence once the convolution process is performed a post processing is done to review the accumulative total weight The pixels with very low total weight i e outside the map are blanked at present by setting their flux intensity to NaN The property hess hifi dp otf filter threshold can be used to specify which should be the minimum accumulated weight Every pixel whose result weight is below the value assigned to the hess hifi dp otf filter threshold will be blanked by setting its flux to the Double NaN value If this property is not set in the HIPE environment the gridding task will discard pixels whose total weight is less than a 1 0 01 of the maximum accumulated weight Output cube of weights In addition to the result cube of flux intensities each output cube product includes and additional three dimensional matrix of weight values These are the result weights computed for each pixel of the cube for every channel as a result of combining the weights assigned to each spectrum e g read from the weights column and the weights computed by the filter function The more contributions there are for a pixel from more and closer spectra the bigger this weight becomes These weights matrix can be used to double check the validty of certain pixel Choo
18. determined by PlotXY according to data to be plotted HCSS 8585 The middle button will zoom in and out the plot while the button is rolled The zoom is centered on the position where the mouse pointer is 5 Utilities toolbox New features available SimpleAsciiTableReader task Provides a simplified front end for reading tabular data but it is not as flexible as AsciiTableReader OpenTask task Open via code the GUI of a registered task FitsReader task update Now if FitsReader cannot generate a product of the expected type it will load it as a plain product 6 Image toolbox New features changes Updated ImportImage to use the coverage Corrected deprecated code HCSS 8704 Remove Popups from ellipseHistogram HCSS 6340 Image viewer not offered with SPIRE level2 image datasets HCSS 7955 Broken link in package html HCSS 8320 ia_toolbox_image NullPointerException when double clicking on clamp task HCSS 8322 ia_toolbox_image NullPointerException when double clicking on ellipseHistogram task What s New in User Release 2 0 Made TaskUtil public HCSS 8234 RotateTask unable to rotate images that contain error and coverage HCSS 8147 SimpleImage setImage should fail with an exception rather than a warning in the log HCSS 8147 SimpleImage setImage should fail with an exception rather than a warning in the log 7 Image dataset New features changes Corrected problem with coverage in SimpleCube Corrected
19. eCubes This task can accept one individual container or a collection of them e g an ArrayList of HifiSpectrumDatasets It can work also with any product which implements the SpectrumContainerBox interface e Convolution table details about the convolution process The DoGridding task offers as an option via the detail boolean input the possibility to create a table providing full details of which spectra have contributed to each pixel of the regular grid which were their input fluxes and weights the weights computed by the filter function the distance of each contributor spectrum to the pixel etc It also includes a set of parameters in the metadata of this output table describing the size of the beam the pixel size the type of filter and its parameters the dimensions of the regular grid etc This output table can be used to created fancy Displays or plots of the construction of the cube overlaying the spectra coordinates or the filter length on a display of the output cube s e Avoid extrapolating data outside the borders of the map This is a fix for SPR HIFI 2916 OTF mapping tasks DoGridding GriddingTask must not extrapolate data The algorithm used by the gridding tasks is a based in a convolution with a filter function within a kernel centered at each pixel of the regular grid This method has an intrinsec problem at the outer sides and in the edges of the area observed it extrapolates or directly copies the intensity fr
20. ence Rotating mouse wheel can zoom in out the plot Dragging with mouse middle button can pan plot A tiny mouse drag can be treated as a single click e New style of properties window 11 Data input output New features available e New FITS keywords added e velocityDefinition HCSS VELDEF FITS e radialVelocity HCSS VFRAME FITS e FitsArchive provides save methods for working with File and OutputStream Two new save methods have been created A java io File or java io OutputStream can be used as argument 12 Datasets New features available e Dataset implements java util Map interface Any class that extends from CompositeDataset Product class included implements java util Map interface for accessing its datasets 13 Array toolbox New features available e New REPEAT functionality added What s New in User Release 2 0 It repeates an array one rank higher than the input with the new dimension containing n repeated copies of the input array 14 Product Access Layer New features include e PAL query interruptible PAL query can be interrupted now from Hipe or Jide See HCSS 7315 for more information e Local store support storing gzipped products See HCSS 7704 for more information e Thread safety improvement deprecate SynchronizedPool and Lockable interface on ProductPool SynchronizedPool in herschel ia pal util package and Lockable interface on ProductPool were deprecated now since all
21. ew source Note that this only works if you installed the source code To do so when using the HIPE installer select the checkbox next to the question Would you like to have the source code installed This is only available if you choose the Advanced installation If you are installing a developer build via the Continuous Installation System use the src yes unpack yes command line options Multiple selection in the navigator view When you want to remove more than one file from HIPE it is not needed to do it one by one Now you can select many files and delete them at once Non blocking opening of FITS files FITS files are opened in the background so it is possible to work with HIPE meanwhile instead of waiting for the load to finish Displaying meta data with different formats In the standard viewers meta data is shown in a table Parameters of type date can be shown in UTC default or TAI Integers can be displayed in decimal default or hexadecimal The format can be chosen through a right click on the corresponding cell What s New in User Release 2 0 Refresh of viewers when data changes In the standard viewers for products datasets and meta data changes in the associated variable e g with a Jython command are reflected with an asterisk in the viewer s tab Pressing F5 or File gt Refresh shows the updated contents in the viewer More log messages The Log view shows messages that pass the existing
22. filter logged from all views through the standard Java logging mechanism Moreover the selected log filter is persisted among sessions Run and stop buttons always present Stop button is not only shown when a Jython script is selected Any perspective that contains the Console view would display this button in the main toolbar Save and Print buttons are also kept in the main toolbar when the editor area is shown Quick clean of variables Getting rid of all existing variables is now easier The new Clear button in the Variables view s toolbar allows to do it without needing to select the variables Bugfixes This version contains fixes for bugs found in the previous release 4 TablePlotter and OverPlotter In this version we rename the OverPlotter plot as OPL and the TablePlotter plot as TPL lt dataset name gt When switching to any column the coordinate values can be seen by moving the cross icon on the plot The axis is adjusted properly when in overlay mode in TablePlotter The Preference button is changed to Layer Props where the layer properties can be set We also move the zoom pan factors to HIPE gt Edit gt Preferences where the factors can be set and saved The layer Appearances is under construction We also introduced a new feature which is to zoom in out the plot using the mouse middle button The zoom is centered at the spot where the mouse points New functionalities available D_IA_GUI_EXPLORER_0_51 HCS
23. om the nearest neighbouring spectra This is something common to all the image reconstruction techniques based on a local interpolation with a convolution filter For maps not rotated with respect to the north axis the task computes an area that spreads half pixel outwards the sides of the area actually observed So this problem is not noticeable However for images made for maps observed with certain rotation angle non zero PATT the result grid contains corner areas which are several pixels away from the area actually observed In some of those pixels outside the area observed one or two pixels away the contributions are very weak 15 What s New in User Release 2 0 due to the closest spectra but once the interpolated spectra are renormalized by dividing by the accumuled weight the intensity of those spectra nearby the pixel outside the map becomes restored to a value very close or idential to that of the neighbour spectrum To avoid this the pixels outside the map are now detected by checking the total weight accumulated for each pixel and blanking those pixels where that accumulated weight is below a threshold value which clearly identifies those pixels which lie outside the area observed A new property hcss dp hifi otf filter threshold has been added to control that Also the task has a new optional input to disable this blanking process extrapolate boolean input false by default The detection of the pixels outsi
24. pools implementation were supposed to be thread safe See HCSS 8040 HCSS 7811 for more information 15 Calibration Sources Database New features available e Switch from custom protocol to HTTP This will avoid problems with firewalls Also the HTTP daemon has better performance and reliability when multiple users access the DB simultaneously e The user manual has been improved Example scripts have been updated e GUI panels showing tables now allow to save these tables to FITS files 16 Virtual Observatory New features available e Herschel Products can now be exported as VO tables such that they can be read by VO applications supporting this protocol When a Product is exported for example by sending it to Topcat it is sent using a particular ID The datasets will appear in Topcat as tables When one of the tables is sent back to HIPE the ID that was used to send the product is used again and HIPE will update the existing product in HIPE with the data from Topcat A copy of the original Product is maintained e All applications on the External Tools page are now supported both for sending data to them or receiving from them 17 QCR Browser New improvements on the QCR Browser e Reports the pipeline final state e Shows when a summary report already exist for a given list of observations What s New in User Release 2 0 e Removable User comments even when the QC was already saved e SPA can create
25. r more robust against Java Swing bugs e General improvements in find replace dialog Preferences links Some preferences may be related with others Now preference panels may point to related categories For example Jython editor preferences include links to fonts and plain text editor preferences Opened editors are re opened the next session Editors are preserved between sessions with the nuance that if variables are not saved editors and viewers associated to them are not reopened Saving variables on exit or not can be configured through preferences HIPE title shows version and selected editor Title of the HIPE window reflects the current version of the software It also contains the name of the current script or variable viewer In addition the splash window has now the application title which is shown in the iconified window of the desktop task bar when starting HIPE Perspectives can be reset to their default layout Release 1 2 introduced persistence of perspective layouts so user customizations are preserved when switching between perspectives and among different HIPE sessions Now rolling back to the default layouts is also possible by right clicking on the button of the current perspective and pressing Reset Source code of Java tasks It is possible to open the source code of tasks provided with the installation that are written in Java In order to do this right click on a task in the Tasks view and select Vi
26. rename the OverPlotter plot as OPL and the TablePlotter plot as TPL lt dataset name gt When switching to any column the coordinate values can be seen by moving the cross icon on the plot The axis is adjusted properly when in overlay mode in TablePlotter The Preference button is changed to Layer Props where the layer properties can be set We also move the zoom pan factors to HIPE gt Edit gt Preferences where the factors can be set and saved The layer Appearances is under construction We also introduced a new feature which is to zoom in out the plot using the mouse middle button The zoom is centered at the spot where the mouse points e HCSS 6235 was implemented e HCSS 6236 was implemented e HCSS 6238 was implemented e HCSS 6795 was implemented e HCSS 7593 was implemented e HCSS 8430 was implemented e HCSS 8356 was implemented e HCSS 8637 was implemented e HCSS 6866 was implemented e HCSS 8585 was implemented Section 4 for more information Utilities toolbox e SimpleAsciiTableReader task e OpenTask task e FitsReader task update See Section 5 for more information Image toolbox ImportImage now also imports the coverage See Section 6 for more information e Image dataset Fixed some Wes problems Fixed a problem with coverage in SimpleCube See Section 7 for more information e Image display 2 What s New in User Release 2 0 e It is possible to set the ticks for the axis manually Automatic
27. se the location of the regular grid fix HIFI 2950 The user can specify the coordinates of a reference pixel within the regular grid Thus the user can control the location of the regular grid This solves SPR HIFI 2950 cube parameters CRVALI CRVAL2 do not change regardless the refPixelOffset input The solution is the following the user can specify both which is the pixel coordinates of the reference point within the regular grid and the coordinates in the sky of such pixel Based on these inputs a proper grid will be computed and the headers of the result cube CRPIXi CRVALi etc are properly computed More flexible selection of input datasets This has been solved by two means e More ways to sepcify which datasets should read from the input HifiTimelineProduct the user can specify certain types of dataset to be read and whether to ignore those flagged with isLine in the summary table or not The user can specify more than one type of datasets e g observations containing other as type of dataset The user can also specify some of the datasets by providing their indices within the HifiTimelineProduct By default only the science datasets where isLine is true are read to compute each cube e GriddingTask can be invoked with the result of previously using the SelectSpectrum task This means that the user can make sophisticated selections before eventually making a cube based on that selection instead of simply picking a given
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