User manual EFC
Contents
1. following command must be used EFC p 4 synthetic_normalized txt2. User manual EFC Written by Bart P P van Houte bvhoute few vu nl Version October 15 2009 1 Installation Download the files EFC cc and Makefile and save them together in the same directory Compile the source code using the make command in UNIX LINUX This generates an executable named EFC In case you are not working on a UNIX LINUX platform use a C CC compiler 2 Data format The data file must be a tab delimited text file in which each row corresponds to the profile of one sample The formatting must be as follows Header lines that start with a are allowed and will be ignored lt sample D gt lt tab gt lt valuel gt lt tab gt lt value2 gt lt tab gt lt value3 gt lt sample D gt lt tab gt lt valuel gt lt tab gt lt value2 gt lt tab gt lt value3 gt lt sample D gt lt tab gt lt valuel gt lt tab gt lt value2 gt lt tab gt lt value3 gt lt sample D gt lt tab gt lt valuel gt lt tab gt lt value2 gt lt tab gt lt value3 gt 3 Running the program The program is run using the following command line EFC lt distance measure gt lt nr clusters gt lt file gt As distance measure you can choose from e e Euclidean distance Pearson distance Spearman distance agreement distance concordance distance aA p S a c 4 Example Suppose one wants to cluster the synthetic normalized data into four clusters using the Pearson distance the
Download Pdf Manuals
Related Search